Juicer 1.5

• Added DNAse mode; specify the restriction site as "none" to enable
• Added exclude fragment flag; use "-x" to run Juicer without creating fragment-delimited maps (this saves 8x space and a lot of time)
• Collisions (more than two loci in one read) are now determined and outputted
• Added another stage to relaunch at, and updated documentation to make this mode more clear
• Added diploid Hi-C creation scripts
• Added new flags for easier portability to LSF from AWS/OpenLava
• Updated documentation; added version information to output

v0.9 Release

Initial Commit v0.9