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setup_requirements.yaml
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setup_requirements.yaml
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name: ACCESS
channels:
- bioconda
- r
- defaults
- conda-forge
dependencies:
- _r-mutex=1.0.0=mro_2
- bamtools=2.5.1=he941832_3
- binutils_impl_linux-64=2.28.1=had2808c_3
- binutils_linux-64=7.2.0=had2808c_27
- ca-certificates=2018.03.07=0
- cairo=1.14.12=h8948797_3
- curl=7.61.0=h84994c4_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.9.1=h8a8886c_0
- fribidi=1.0.4=h14c3975_0
- gcc_impl_linux-64=7.2.0=habb00fd_3
- gcc_linux-64=7.2.0=h550dcbe_27
- gfortran_impl_linux-64=7.2.0=hdf63c60_3
- gfortran_linux-64=7.2.0=h550dcbe_27
- glib=2.56.1=h000015b_0
- graphite2=1.3.11=h16798f4_2
- gxx_impl_linux-64=7.2.0=hdf63c60_3
- gxx_linux-64=7.2.0=h550dcbe_27
- harfbuzz=1.8.4=hec2c2bc_0
- icu=58.2=h9c2bf20_1
- libcurl=7.61.0=h1ad7b7a_0
- libedit=3.1.20170329=h6b74fdf_2
- libffi=3.2.1=hd88cf55_4
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=hdf63c60_3
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.34=hb9fc6fc_0
- libssh2=1.8.0=h9cfc8f7_4
- libstdcxx-ng=7.2.0=hdf63c60_3
- libuuid=1.0.3=h1bed415_2
- libxcb=1.13=h1bed415_1
- libxml2=2.9.8=h26e45fe_1
- make=4.2.1=h1bed415_1
- mro-base=3.5.0=h1c2f66e_0
- mro-basics=3.5.0=0
- ncurses=6.1=hf484d3e_0
- nodejs=6.10.2=0
- openssl=1.0.2o=h14c3975_1
- pango=1.42.3=h8589676_0
- pcre=8.42=h439df22_0
- pip=19.1.1=py27_0
- pixman=0.34.0=hceecf20_3
- python=2.7.14=h1571d57_31
- r=3.5.0=mro350_0
- r-boot=1.3_20=mro350_0
# - r-checkpoint=0.4.4=mro350_0
- r-class=7.3_14=mro350_0
- r-cluster=2.0.7_1=mro350_0
- r-codetools=0.2_15=mro350_0
- r-curl=3.2=mro350_0
- r-deployrrserve=9.0.0=mro350_0
- r-doparallel=1.0.13=mro350_0
# - r-devtools=1.13.6
- r-foreach=1.5.0=mro350_0
- r-foreign=0.8_70=mro350_0
- r-iterators=1.0.10=mro350_0
- r-jsonlite=1.5=mro350_0
- r-kernsmooth=2.23_15=mro350_0
- r-lattice=0.20_35=mro350_0
- r-mass=7.3_49=mro350_0
- r-matrix=1.2_14=mro350_0
- r-mgcv=1.8_23=mro350_0
- r-microsoftr=3.5.0.108=mro350_0
- r-nlme=3.1_137=mro350_0
- r-nnet=7.3_12=mro350_0
- r-png=0.1_7=mro350_0
- r-r6=2.2.2=mro350_0
- r-recommended=3.5.0=mro350_0
- r-revoioq=10.0.0=mro350_0
- r-revomods=11.0.0=mro350_0
- r-revoutilsmath=11.0.0=mro350_0
- r-rpart=4.1_13=mro350_0
- r-runit=0.4.26=mro350_0
- r-spatial=7.3_11=mro350_0
- r-survival=2.41_3=mro350_0
- readline=7.0=ha6073c6_4
- setuptools=40.0.0=py27_0
- sqlite=3.24.0=h84994c4_0
- tk=8.6.7=hc745277_3
- wheel=0.31.1=py27_0
- xz=5.2.4=h14c3975_4
- zlib=1.2.11=ha838bed_2
- pip:
- argparse==1.4.0
- avro==1.8.1
- backports-functools-lru-cache==1.5
- backports-ssl-match-hostname==3.7.0.1
- bd2k-python-lib==1.14a1.dev48
- cachecontrol==0.11.7
- chardet==3.0.4
- cwltest==1.0.20190228134645
- cwltool==1.0.20180306140409
- cycler==0.10.0
- dill==0.2.7.1
- docker==2.5.1
- docker-pycreds==0.4.0
- docutils==0.14
- emoji==0.5.2
- future==0.17.1
- futures==3.2.0
- galaxy-lib==17.9.3
- idna==2.6
- ipaddress==1.0.22
- isodate==0.6.0
- junit-xml==1.8
- kiwisolver==1.1.0
- lockfile==0.12.2
- matplotlib==2.2.2
- mistune==0.8.4
- numpy==1.14.2
- pandas==0.19.0
- pyparsing==2.4.0
- pypdf2==1.26.0
- pysam==0.14.1
- pyyaml==5.1
- rdflib==4.2.2
- rdflib-jsonld==0.4.0
- requests==2.18.4
- ruamel-ordereddict==0.4.13
- ruamel-yaml==0.14.12
- schema-salad==2.7.20181126142424
- scipy==1.1.0
- seaborn==0.8.1
- shellescape==3.4.1
- six==1.12.0
- subprocess32==3.5.2
- toil-ionox0[cwl]==0.0.5
- typing==3.6.6
- typing-extensions==3.7.2
- urllib3==1.22
- websocket-client==0.56.0
- xlrd==1.1.0