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Releases: apcamargo/taxopy

v0.8.0

05 Aug 06:56
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  • The rank_taxid_dictionary attribute was added to Taxon objects.

v0.7.0

13 Jul 03:55
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  • The find_lca and find_majority_vote functions return objects of the _AggregatedTaxon class. _AggregatedTaxon is a subclass of Taxon with two additional attributes: agreement and aggregated_taxa.

v0.6.0

16 Jun 20:05
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  • Taxids are now encoded as integers instead of strings. This reduced the memory usage and made taxopy faster.

v0.5.0

05 Nov 13:21
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  • Add the new function taxid_from_name, which takes a taxon name and returns a list containing the taxonomic identifiers associated with it.
  • Avoid redownloading the database if nodes.dmp and names.dmp are already in the directory.

v0.4.1

20 Sep 14:42
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  • Allow the fraction parameter of the find_majority_vote function to assume values less than 0.5.

v0.4.0

20 Aug 18:26
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  • Add the weights parameter to the find_majority_vote function.

v0.3.0

01 Apr 21:08
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  • Add the fraction parameter to the find_majority_vote function.

v0.2.1

15 Mar 08:26
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  • Fix a bug where find_majority_vote tried to create a Taxon object using None as input.
  • Allow a list containing two Taxon objects as input to find_majority_vote.

v0.2.0

14 Mar 23:56
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  • Added the find_majority_vote function to find the most specific taxon that is shared by more than half of the lineages of a list of taxa.

v0.1.0

06 Mar 19:32
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Initial release.