diff --git a/src/utils/BamTools/include/BamAlignment.mapping.hpp b/src/utils/BamTools/include/BamAlignment.mapping.hpp
index ff28899be..1ff4ece46 100644
--- a/src/utils/BamTools/include/BamAlignment.mapping.hpp
+++ b/src/utils/BamTools/include/BamAlignment.mapping.hpp
@@ -1,51 +1,51 @@
 
-struct _Bin_t {
-    operator uint32_t() const {return (uint32_t)(_ptr()->core.bin);}
-    const uint32_t& operator=(const uint32_t& val) {
-        _ptr()->core.bin = (uint32_t)val;
+struct _RefID_t {
+    operator int32_t() const {return (int32_t)(_ptr()->core.tid);}
+    const int32_t& operator=(const int32_t& val) {
+        _ptr()->core.tid = (int32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Bin)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->RefID)))->HtsObj2();
         }
-} Bin;
+} RefID;
 
-struct _AlignmentFlag_t {
-    operator int32_t() const {return (int32_t)(_ptr()->core.flag);}
+struct _Position_t {
+    operator int32_t() const {return (int32_t)(_ptr()->core.pos);}
     const int32_t& operator=(const int32_t& val) {
-        _ptr()->core.flag = (int32_t)val;
+        _ptr()->core.pos = (int32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->AlignmentFlag)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Position)))->HtsObj2();
         }
-} AlignmentFlag;
+} Position;
 
-struct _MapQuality_t {
-    operator int16_t() const {return (int16_t)(_ptr()->core.qual);}
-    const int16_t& operator=(const int16_t& val) {
-        _ptr()->core.qual = (int16_t)val;
+struct _MatePosition_t {
+    operator int32_t() const {return (int32_t)(_ptr()->core.mpos);}
+    const int32_t& operator=(const int32_t& val) {
+        _ptr()->core.mpos = (int32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MapQuality)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MatePosition)))->HtsObj2();
         }
-} MapQuality;
+} MatePosition;
 
-struct _Length_t {
-    operator int32_t() const {return (int32_t)(_ptr()->core.l_qseq);}
+struct _MateRefID_t {
+    operator int32_t() const {return (int32_t)(_ptr()->core.mtid);}
     const int32_t& operator=(const int32_t& val) {
-        _ptr()->core.l_qseq = (int32_t)val;
+        _ptr()->core.mtid = (int32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Length)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MateRefID)))->HtsObj2();
         }
-} Length;
+} MateRefID;
 
 struct _InsertSize_t {
     operator int32_t() const {return (int32_t)(_ptr()->core.isize);}
@@ -59,86 +59,86 @@ struct _InsertSize_t {
         }
 } InsertSize;
 
-struct _MatePosition_t {
-    operator int32_t() const {return (int32_t)(_ptr()->core.mpos);}
+struct _Length_t {
+    operator int32_t() const {return (int32_t)(_ptr()->core.l_qseq);}
     const int32_t& operator=(const int32_t& val) {
-        _ptr()->core.mpos = (int32_t)val;
+        _ptr()->core.l_qseq = (int32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MatePosition)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Length)))->HtsObj2();
         }
-} MatePosition;
+} Length;
 
-struct _NumCigarOperations_t {
-    operator uint32_t() const {return (uint32_t)(_ptr()->core.n_cigar);}
+struct _Bin_t {
+    operator uint32_t() const {return (uint32_t)(_ptr()->core.bin);}
     const uint32_t& operator=(const uint32_t& val) {
-        _ptr()->core.n_cigar = (uint32_t)val;
+        _ptr()->core.bin = (uint32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->NumCigarOperations)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Bin)))->HtsObj2();
         }
-} NumCigarOperations;
+} Bin;
 
-struct _QuerySequenceLength_t {
-    operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qseq);}
-    const uint32_t& operator=(const uint32_t& val) {
-        _ptr()->core.l_qseq = (uint32_t)val;
+struct _MapQuality_t {
+    operator int16_t() const {return (int16_t)(_ptr()->core.qual);}
+    const int16_t& operator=(const int16_t& val) {
+        _ptr()->core.qual = (int16_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QuerySequenceLength)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MapQuality)))->HtsObj2();
         }
-} QuerySequenceLength;
+} MapQuality;
 
-struct _Position_t {
-    operator int32_t() const {return (int32_t)(_ptr()->core.pos);}
+struct _AlignmentFlag_t {
+    operator int32_t() const {return (int32_t)(_ptr()->core.flag);}
     const int32_t& operator=(const int32_t& val) {
-        _ptr()->core.pos = (int32_t)val;
+        _ptr()->core.flag = (int32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->Position)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->AlignmentFlag)))->HtsObj2();
         }
-} Position;
+} AlignmentFlag;
 
-struct _QueryNameLength_t {
-    operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qname);}
+struct _NumCigarOperations_t {
+    operator uint32_t() const {return (uint32_t)(_ptr()->core.n_cigar);}
     const uint32_t& operator=(const uint32_t& val) {
-        _ptr()->core.l_qname = (uint32_t)val;
+        _ptr()->core.n_cigar = (uint32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QueryNameLength)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->NumCigarOperations)))->HtsObj2();
         }
-} QueryNameLength;
+} NumCigarOperations;
 
-struct _MateRefID_t {
-    operator int32_t() const {return (int32_t)(_ptr()->core.mtid);}
-    const int32_t& operator=(const int32_t& val) {
-        _ptr()->core.mtid = (int32_t)val;
+struct _QueryNameLength_t {
+    operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qname);}
+    const uint32_t& operator=(const uint32_t& val) {
+        _ptr()->core.l_qname = (uint32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->MateRefID)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QueryNameLength)))->HtsObj2();
         }
-} MateRefID;
+} QueryNameLength;
 
-struct _RefID_t {
-    operator int32_t() const {return (int32_t)(_ptr()->core.tid);}
-    const int32_t& operator=(const int32_t& val) {
-        _ptr()->core.tid = (int32_t)val;
+struct _QuerySequenceLength_t {
+    operator uint32_t() const {return (uint32_t)(_ptr()->core.l_qseq);}
+    const uint32_t& operator=(const uint32_t& val) {
+        _ptr()->core.l_qseq = (uint32_t)val;
         return val;
     }
     private:
         bam1_t* _ptr() const {
-           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->RefID)))->HtsObj2();
+           return ((BamAlignment*)(((uintptr_t)this) - ((uintptr_t)&((BamAlignment*)NULL)->QuerySequenceLength)))->HtsObj2();
         }
-} RefID;
+} QuerySequenceLength;