diff --git a/modules/nf-core/ltrfinder/environment.yml b/modules/nf-core/ltrfinder/environment.yml
index 289aadd3e93..7f3545975a8 100644
--- a/modules/nf-core/ltrfinder/environment.yml
+++ b/modules/nf-core/ltrfinder/environment.yml
@@ -6,4 +6,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - "bioconda::edta=2.2.0"
+  - "bioconda::ltr_finder_parallel=1.1"
diff --git a/modules/nf-core/ltrfinder/main.nf b/modules/nf-core/ltrfinder/main.nf
index 9573da55856..3e59e3c7acc 100644
--- a/modules/nf-core/ltrfinder/main.nf
+++ b/modules/nf-core/ltrfinder/main.nf
@@ -4,8 +4,8 @@ process LTRFINDER {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/edta:2.2.0--hdfd78af_1':
-        'biocontainers/edta:2.2.0--hdfd78af_1' }"
+        'https://depot.galaxyproject.org/singularity/ltr_finder_parallel:1.1--hdfd78af_0':
+        'biocontainers/ltr_finder_parallel:1.1--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(fasta)
diff --git a/modules/nf-core/ltrfinder/tests/main.nf.test b/modules/nf-core/ltrfinder/tests/main.nf.test
index a2eb9f6dd59..447ce34d3e1 100644
--- a/modules/nf-core/ltrfinder/tests/main.nf.test
+++ b/modules/nf-core/ltrfinder/tests/main.nf.test
@@ -7,16 +7,29 @@ nextflow_process {
     tag "modules"
     tag "modules_nfcore"
     tag "ltrfinder"
+    tag "gunzip/main"
 
-    test("homo_sapiens-genome_fasta-success") {
+    test("actinidia_chinensis-genome_21_fasta_gz-success") {
+
+        setup {
+            run('GUNZIP') {
+                script "../../gunzip/main"
+
+                process {
+                    """
+                    input[0] = [
+                        [ id:'test' ], // meta map
+                        file(params.test_data['actinidia_chinensis']['genome']['genome_21_fasta_gz'], checkIfExists: true)
+                    ]
+                    """
+                }
+            }
+        }
 
         when {
             process {
                 """
-                input[0] = [
-                    [ id:'test' ], // meta map
-                    file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
-                ]
+                input[0] = GUNZIP.out.gunzip
                 """
             }
         }
@@ -25,7 +38,7 @@ nextflow_process {
             assertAll(
                 { assert process.success },
                 { assert snapshot(process.out).match() },
-                { assert snapshot(process.out.versions).match("versions") }
+                { assert snapshot(path(process.out.versions[0]).text).match("versions") }
             )
         }
 
@@ -40,7 +53,7 @@ nextflow_process {
                 """
                 input[0] = [
                     [ id:'test' ], // meta map
-                    file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
+                    file(params.test_data['actinidia_chinensis']['genome']['genome_21_fasta_gz'], checkIfExists: true)
                 ]
                 """
             }
@@ -50,7 +63,7 @@ nextflow_process {
             assertAll(
                 { assert process.success },
                 { assert snapshot(process.out).match() },
-                { assert snapshot(process.out.versions).match("versions") }
+                { assert snapshot(path(process.out.versions[0]).text).match("stub_versions") }
             )
         }
 
diff --git a/modules/nf-core/ltrfinder/tests/main.nf.test.snap b/modules/nf-core/ltrfinder/tests/main.nf.test.snap
index 547ca4856ef..54a2cee10f2 100644
--- a/modules/nf-core/ltrfinder/tests/main.nf.test.snap
+++ b/modules/nf-core/ltrfinder/tests/main.nf.test.snap
@@ -1,13 +1,5 @@
 {
-    "versions": {
-        "content": [
-            [
-                "versions.yml:md5,2cff73621bfc5c4abc40613c33bd92b8"
-            ]
-        ],
-        "timestamp": "2023-12-05T09:09:31.335554"
-    },
-    "stub": {
+    "actinidia_chinensis-genome_21_fasta_gz-success": {
         "content": [
             {
                 "0": [
@@ -15,7 +7,7 @@
                         {
                             "id": "test"
                         },
-                        "test.scn:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "test.scn:md5,006193c9eaf3f552ccb0369f159e7660"
                     ]
                 ],
                 "1": [
@@ -23,18 +15,18 @@
                         {
                             "id": "test"
                         },
-                        "test.gff3:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "test.gff3:md5,96e5305163939e4381e1b94b660dc0a2"
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,2cff73621bfc5c4abc40613c33bd92b8"
+                    "versions.yml:md5,7b24225b810fa88cfb2a887de11be333"
                 ],
                 "gff": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.gff3:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "test.gff3:md5,96e5305163939e4381e1b94b660dc0a2"
                     ]
                 ],
                 "scn": [
@@ -42,17 +34,31 @@
                         {
                             "id": "test"
                         },
-                        "test.scn:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "test.scn:md5,006193c9eaf3f552ccb0369f159e7660"
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,2cff73621bfc5c4abc40613c33bd92b8"
+                    "versions.yml:md5,7b24225b810fa88cfb2a887de11be333"
                 ]
             }
         ],
-        "timestamp": "2024-01-16T10:01:22.368927"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.1"
+        },
+        "timestamp": "2024-02-16T09:14:38.509965"
     },
-    "homo_sapiens-genome_fasta-success": {
+    "versions": {
+        "content": [
+            "\"LTRFINDER\":\n    LTR_FINDER_parallel: v1.1\n    ltr_finder: v1.07\n"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.1"
+        },
+        "timestamp": "2024-02-16T09:16:55.301422"
+    },
+    "stub": {
         "content": [
             {
                 "0": [
@@ -60,7 +66,7 @@
                         {
                             "id": "test"
                         },
-                        "test.scn:md5,2ce449dff751e59dbc292b6888491954"
+                        "test.scn:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "1": [
@@ -68,18 +74,18 @@
                         {
                             "id": "test"
                         },
-                        "test.gff3:md5,a91c388a54d7694bd14a4b085935759c"
+                        "test.gff3:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "2": [
-                    "versions.yml:md5,2cff73621bfc5c4abc40613c33bd92b8"
+                    "versions.yml:md5,7b24225b810fa88cfb2a887de11be333"
                 ],
                 "gff": [
                     [
                         {
                             "id": "test"
                         },
-                        "test.gff3:md5,a91c388a54d7694bd14a4b085935759c"
+                        "test.gff3:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "scn": [
@@ -87,14 +93,28 @@
                         {
                             "id": "test"
                         },
-                        "test.scn:md5,2ce449dff751e59dbc292b6888491954"
+                        "test.scn:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,2cff73621bfc5c4abc40613c33bd92b8"
+                    "versions.yml:md5,7b24225b810fa88cfb2a887de11be333"
                 ]
             }
         ],
-        "timestamp": "2023-12-05T09:09:31.32397"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.1"
+        },
+        "timestamp": "2024-02-16T09:14:43.054758"
+    },
+    "stub_versions": {
+        "content": [
+            "\"LTRFINDER\":\n    LTR_FINDER_parallel: v1.1\n    ltr_finder: v1.07\n"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.1"
+        },
+        "timestamp": "2024-02-16T09:16:59.800724"
     }
 }
\ No newline at end of file
diff --git a/tests/config/test_data.config b/tests/config/test_data.config
index dccf3e89bbd..676f4e2a4be 100644
--- a/tests/config/test_data.config
+++ b/tests/config/test_data.config
@@ -626,10 +626,15 @@ params {
         }
         'saccharomyces_cerevisiae' {
             'genome' {
-                samplesheet                                    = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/samplesheet.csv"
-                genome_gfp_gtf                                 = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/genome_gfp.gtf"
-		kallisto_results                               = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/kallisto_results.tar.gz"
-                salmon_results                                 = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/salmon_results.tar.gz"
+                samplesheet                     = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/samplesheet.csv"
+                genome_gfp_gtf                  = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/genome_gfp.gtf"
+		        kallisto_results                = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/kallisto_results.tar.gz"
+                salmon_results                  = "${params.test_data_base}/data/genomics/eukaryotes/saccharomyces_cerevisiae/salmon_results.tar.gz"
+            }
+        }
+        'actinidia_chinensis' {
+            'genome' {
+                genome_21_fasta_gz              = "${params.test_data_base}/data/genomics/eukaryotes/actinidia_chinensis/genome/chr1/genome.fasta.gz"
             }
         }
         'generic' {