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Integrate EDAM ontology and bio.tools to the model zoo #358

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oeway opened this issue Oct 11, 2023 · 0 comments
Open

Integrate EDAM ontology and bio.tools to the model zoo #358

oeway opened this issue Oct 11, 2023 · 0 comments

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@oeway
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oeway commented Oct 11, 2023

We are discussing the possibility of integrating the EDAM ontology and bio.tools into the model zoo, e.g. the tagging system, we can make automatic suggestions for the tags chose by the users.

We can for example use the ebi ontology service to query the ontology: https://www.ebi.ac.uk/ols/api/suggest?q=electron%20microscopy

However, it doesn't contain the concrete tools, for that we can pull it from bio.tools (its content repo: https://github.com/research-software-ecosystem/content and a dump of all the items https://github.com/research-software-ecosystem/content/tree/master/datasets).

And also, how do we ingest new terms into the edam ontoglogy?

@matuskalas please comment

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