We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
@egonw and I were discussing preferred IRIs for Xref properties in BridgeDb, and we'd welcome input from other community members on this.
This webservice endpoint http://webservice.bridgedb.org/Human/attributes/En/ENSG00000139618 returns:
Description BRCA2, DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1101] Symbol BRCA2 Type protein_coding Chromosome 13
To describe that call, do these IRIs appear correct? description: http://purl.org/dc/terms/description type: http://www.w3.org/1999/02/22-rdf-syntax-ns#type chromosome: http://purl.obolibrary.org/obo/GO_0005694 identifier: http://purl.obolibrary.org/obo/IAO_0000577 symbol: http://semanticscience.org/resource/SIO_000105
description
type
chromosome
identifier
symbol
Does Symbol refer to name, as in one of these IRIs? https://vocabularies.wikipathways.org/gpml#textlabel http://schema.org/name http://www.biopax.org/release/biopax-level3.owl#name http://www.biopax.org/release/biopax-level3.owl#displayName http://www.biopax.org/release/biopax-level3.owl#standardName
Symbol
name
Or is it specific to a gene symbol, as in http://edamontology.org/data_1026 from the EDAM ontology?
Note that http://webservice.bridgedb.org/Human/attributes/Ce/CHEBI%3A29108 returns:
Symbol calcium Symbol Ca(2+) Symbol calcium(2+) Symbol calcium, doubly charged positive ion Symbol Ca Symbol Calcium element
and http://webservice.bridgedb.org/Human/attributeSearch/calcium?attrName=Symbol returns:
C9J224 Uniprot-TrEMBL Voltage-dependent L-type calcium channel subunit beta-4 (Fragment) HMDB00464 HMDB Calcium Q9P0X4 Uniprot-TrEMBL Voltage-dependent T-type calcium channel subunit alpha-1I CHEBI:4496 ChEBI Dibasic calcium phosphate dihydrate CHEBI:9679 ChEBI Tricalcium phosphate Q86V35 Uniprot-TrEMBL Calcium-binding protein 7 O00305 Uniprot-TrEMBL Voltage-dependent L-type calcium channel subunit beta-4 CHEBI:3309 ChEBI Calcium Gluconate CHEBI:5010 ChEBI Fenprofen calcium B0QYI5 Uniprot-TrEMBL EF-hand calcium-binding domain-containing protein 6 P57103 Uniprot-TrEMBL Sodium/calcium exchanger 3 HMDB38053 HMDB Calcium trimetaphosphate CHEBI:3311 ChEBI Calcium carbonate E7DBM8 Uniprot-TrEMBL Voltage-dependent L-type calcium channel subunit beta-4 CHEBI:4757 ChEBI Edetate calcium disodium E7EN11 Uniprot-TrEMBL Voltage-dependent L-type calcium channel subunit beta-4 HMDB14471 HMDB Calcium Gluceptate Q5THR3 Uniprot-TrEMBL EF-hand calcium-binding domain-containing protein 6 F2Z391 Uniprot-TrEMBL Sodium/calcium exchanger 3
The text was updated successfully, but these errors were encountered:
No branches or pull requests
@egonw and I were discussing preferred IRIs for Xref properties in BridgeDb, and we'd welcome input from other community members on this.
This webservice endpoint http://webservice.bridgedb.org/Human/attributes/En/ENSG00000139618 returns:
To describe that call, do these IRIs appear correct?
description
: http://purl.org/dc/terms/descriptiontype
: http://www.w3.org/1999/02/22-rdf-syntax-ns#typechromosome
: http://purl.obolibrary.org/obo/GO_0005694identifier
: http://purl.obolibrary.org/obo/IAO_0000577symbol
: http://semanticscience.org/resource/SIO_000105Does
Symbol
refer toname
, as in one of these IRIs?https://vocabularies.wikipathways.org/gpml#textlabel
http://schema.org/name
http://www.biopax.org/release/biopax-level3.owl#name
http://www.biopax.org/release/biopax-level3.owl#displayName
http://www.biopax.org/release/biopax-level3.owl#standardName
Or is it specific to a gene symbol, as in http://edamontology.org/data_1026 from the EDAM ontology?
Note that http://webservice.bridgedb.org/Human/attributes/Ce/CHEBI%3A29108 returns:
and http://webservice.bridgedb.org/Human/attributeSearch/calcium?attrName=Symbol returns:
The text was updated successfully, but these errors were encountered: