From a392b109d68f83216fd4492c132d846ebbd6e6d7 Mon Sep 17 00:00:00 2001
From: Riley Grant <grantrileyh@gmail.com>
Date: Wed, 1 May 2024 20:27:47 -0500
Subject: [PATCH] feat(browser): update hgdp tutorial download links

---
 .../src/DownloadsPage/GnomadV3Downloads.tsx   |  82 ++--
 .../__snapshots__/DownloadsPage.spec.tsx.snap | 353 ++++++++++++++++--
 2 files changed, 388 insertions(+), 47 deletions(-)

diff --git a/browser/src/DownloadsPage/GnomadV3Downloads.tsx b/browser/src/DownloadsPage/GnomadV3Downloads.tsx
index c4e449cd4..b86f5b025 100644
--- a/browser/src/DownloadsPage/GnomadV3Downloads.tsx
+++ b/browser/src/DownloadsPage/GnomadV3Downloads.tsx
@@ -195,7 +195,7 @@ const GnomadV3Downloads = () => (
         <ListItem>
           <DownloadLinks
             label="Sample metadata TSV"
-            path="/release/3.1.2/vcf/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_sample_meta.tsv.bgz"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_updated.tsv"
           />
         </ListItem>
         {hgdpAnd1kgChromosomeVcfs.map(({ chrom, size, md5 }) => (
@@ -435,21 +435,21 @@ const GnomadV3Downloads = () => (
         <ListItem>
           <DownloadLinks
             label="Sample metadata TSV"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/gnomad_meta_v1.tsv"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_v1.tsv"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="Subset of the HGDP+1KG callset MatrixTable"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/pca_preprocessing/ld_pruned.mt"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/pca_preprocessing/ld_pruned.mt"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="Related sample IDs Hail Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/pca_preprocessing/related_sample_ids.ht"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/pca_preprocessing/related_sample_ids.ht"
           />
         </ListItem>
 
@@ -457,21 +457,21 @@ const GnomadV3Downloads = () => (
         <ListItem>
           <GetUrlButtons
             label="Principal component analysis (PCA) PC score tables GCS Bucket"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/pca/pc_scores_with_outliers/"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/pca/pc_scores_with_outliers/"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <DownloadLinks
             label="PCA outliers table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/pca/pca_outliers.txt"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/pca/pca_outliers.txt"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="PCA PC score tables without outliers GCS Buckets"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/pca/pc_scores_without_outliers/"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/pca/pc_scores_without_outliers/"
           />
         </ListItem>
 
@@ -479,42 +479,56 @@ const GnomadV3Downloads = () => (
         <ListItem>
           <GetUrlButtons
             label="Variants and unrelated samples MatrixTable"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/pca_results/unrelateds_without_outliers.mt"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/pca_results/unrelateds_without_outliers.mt"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="Variants and related samples MatrixTable"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/pca_results/relateds_without_outliers.mt"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/pca_results/relateds_without_outliers.mt"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <DownloadLinks
             label="Population-level statistical summary TSV"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/post_qc_summary.tsv"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/post_qc_summary.tsv"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <DownloadLinks
             label="Doubleton counts CSV"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/doubleton_count.csv"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/doubleton_count.csv"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
-            label="Variants and unrelated sample PLINK files"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/hgdp_tgp*"
+            label="Variants and unrelated sample PLINK files - .bed"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/hgdp_tgp.bed"
+          />
+        </ListItem>
+        {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
+        <ListItem>
+          <GetUrlButtons
+            label="Variants and unrelated sample PLINK files - .bim"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/hgdp_tgp.bim"
+          />
+        </ListItem>
+        {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
+        <ListItem>
+          <GetUrlButtons
+            label="Variants and unrelated sample PLINK files - .fam"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/hgdp_tgp.fam"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <DownloadLinks
             label="Population-level mean fixation index table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/mean_fst.txt"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/mean_fst.txt"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
@@ -542,7 +556,7 @@ const GnomadV3Downloads = () => (
         <ListItem>
           <GetUrlButtons
             label="HGDP+1KG and GVV intersection Matrix Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/data_intersection/hgdp_tgp_ggv_intersect.mt"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/data_intersection/hgdp_tgp_ggv_intersect.mt"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
@@ -565,21 +579,21 @@ const GnomadV3Downloads = () => (
         <ListItem>
           <GetUrlButtons
             label="Pre-QC column fields Hail Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/pre_qc_plotting.ht"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/pre_qc_plotting.ht"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="Pre-QC expected heterozygosity Hail Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/expected_hets_pre_qc.ht"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/expected_hets_pre_qc.ht"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="Pre-QC actual heterozygosity Hail Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/actual_hets_pre_qc.ht"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/actual_hets_pre_qc.ht"
           />
         </ListItem>
 
@@ -588,28 +602,52 @@ const GnomadV3Downloads = () => (
         <ListItem>
           <GetUrlButtons
             label="Post-QC column fields Hail Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/post_qc_plotting.ht"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/post_qc_plotting.ht"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="Post-QC expected heterozygosity Hail Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/expected_hets_post_qc.ht"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/expected_hets_post_qc.ht"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <GetUrlButtons
             label="Post-QC actual heterozygosity Hail Table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/actual_hets_post_qc.ht"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/actual_hets_post_qc.ht"
           />
         </ListItem>
         {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
         <ListItem>
           <DownloadLinks
             label="Post-QC site frequency spectrum table"
-            path="/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/sfs_post_qc.txt"
+            path="/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/sfs_post_qc.txt"
+          />
+        </ListItem>
+        {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
+        <ListItem>
+          <DownloadLinks
+            label="Phased haplotype ChrX PAR1"
+            path="/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par1.shapeit5_common.bcf"
+            associatedFileType="CSI"
+          />
+        </ListItem>
+        {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
+        <ListItem>
+          <DownloadLinks
+            label="Phased haplotype ChrX PAR2"
+            path="/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par2.shapeit5_common.bcf"
+            associatedFileType="CSI"
+          />
+        </ListItem>
+        {/* @ts-expect-error TS(2745) FIXME: This JSX tag's 'children' prop expects type 'never... Remove this comment to see the full error message */}
+        <ListItem>
+          <DownloadLinks
+            label="Phased haplotype ChrX Non-PAR"
+            path="/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_non_par.full.shapeit5_rare.bcf"
+            associatedFileType="CSI"
           />
         </ListItem>
       </FileList>
diff --git a/browser/src/DownloadsPage/__snapshots__/DownloadsPage.spec.tsx.snap b/browser/src/DownloadsPage/__snapshots__/DownloadsPage.spec.tsx.snap
index e734d220f..9198dfb99 100644
--- a/browser/src/DownloadsPage/__snapshots__/DownloadsPage.spec.tsx.snap
+++ b/browser/src/DownloadsPage/__snapshots__/DownloadsPage.spec.tsx.snap
@@ -10651,7 +10651,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Sample metadata TSV from Google"
               className="c10"
-              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1.2/vcf/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_sample_meta.tsv.bgz"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_updated.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -10661,7 +10661,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Sample metadata TSV from Amazon"
               className="c10"
-              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1.2/vcf/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_sample_meta.tsv.bgz"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_updated.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -10671,7 +10671,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Sample metadata TSV from Microsoft"
               className="c10"
-              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1.2/vcf/genomes/gnomad.genomes.v3.1.2.hgdp_1kg_subset_sample_meta.tsv.bgz"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_updated.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13654,7 +13654,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Sample metadata TSV from Google"
               className="c10"
-              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/gnomad_meta_v1.tsv"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_v1.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13664,7 +13664,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Sample metadata TSV from Amazon"
               className="c10"
-              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/gnomad_meta_v1.tsv"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_v1.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13674,7 +13674,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Sample metadata TSV from Microsoft"
               className="c10"
-              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/gnomad_meta_v1.tsv"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/gnomad_meta_v1.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13803,7 +13803,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download PCA outliers table from Google"
               className="c10"
-              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg/pca/pca_outliers.txt"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/pca/pca_outliers.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13813,7 +13813,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download PCA outliers table from Amazon"
               className="c10"
-              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg/pca/pca_outliers.txt"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg_v2/pca/pca_outliers.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13823,7 +13823,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download PCA outliers table from Microsoft"
               className="c10"
-              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg/pca/pca_outliers.txt"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg_v2/pca/pca_outliers.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13952,7 +13952,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Population-level statistical summary TSV from Google"
               className="c10"
-              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/post_qc_summary.tsv"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/post_qc_summary.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13962,7 +13962,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Population-level statistical summary TSV from Amazon"
               className="c10"
-              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/post_qc_summary.tsv"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/post_qc_summary.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13972,7 +13972,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Population-level statistical summary TSV from Microsoft"
               className="c10"
-              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg/metadata_and_qc/post_qc_summary.tsv"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg_v2/metadata_and_qc/post_qc_summary.tsv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -13993,7 +13993,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Doubleton counts CSV from Google"
               className="c10"
-              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/doubleton_count.csv"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/doubleton_count.csv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14003,7 +14003,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Doubleton counts CSV from Amazon"
               className="c10"
-              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/doubleton_count.csv"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/doubleton_count.csv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14013,7 +14013,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Doubleton counts CSV from Microsoft"
               className="c10"
-              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/doubleton_count.csv"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/doubleton_count.csv"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14025,13 +14025,13 @@ exports[`Downloads Page has no unexpected changes 1`] = `
           className="c20"
         >
           <span>
-            Variants and unrelated sample PLINK files
+            Variants and unrelated sample PLINK files - .bed
           </span>
           <br />
           Show URL for
            
           <button
-            aria-label="Show Google URL for Variants and unrelated sample PLINK files"
+            aria-label="Show Google URL for Variants and unrelated sample PLINK files - .bed"
             className="c21"
             onClick={[Function]}
             type="button"
@@ -14040,7 +14040,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
           </button>
            / 
           <button
-            aria-label="Show Amazon URL for Variants and unrelated sample PLINK files"
+            aria-label="Show Amazon URL for Variants and unrelated sample PLINK files - .bed"
             className="c21"
             onClick={[Function]}
             type="button"
@@ -14049,7 +14049,79 @@ exports[`Downloads Page has no unexpected changes 1`] = `
           </button>
            / 
           <button
-            aria-label="Show Microsoft URL for Variants and unrelated sample PLINK files"
+            aria-label="Show Microsoft URL for Variants and unrelated sample PLINK files - .bed"
+            className="c21"
+            onClick={[Function]}
+            type="button"
+          >
+            Microsoft
+          </button>
+        </li>
+        <li
+          className="c20"
+        >
+          <span>
+            Variants and unrelated sample PLINK files - .bim
+          </span>
+          <br />
+          Show URL for
+           
+          <button
+            aria-label="Show Google URL for Variants and unrelated sample PLINK files - .bim"
+            className="c21"
+            onClick={[Function]}
+            type="button"
+          >
+            Google
+          </button>
+           / 
+          <button
+            aria-label="Show Amazon URL for Variants and unrelated sample PLINK files - .bim"
+            className="c21"
+            onClick={[Function]}
+            type="button"
+          >
+            Amazon
+          </button>
+           / 
+          <button
+            aria-label="Show Microsoft URL for Variants and unrelated sample PLINK files - .bim"
+            className="c21"
+            onClick={[Function]}
+            type="button"
+          >
+            Microsoft
+          </button>
+        </li>
+        <li
+          className="c20"
+        >
+          <span>
+            Variants and unrelated sample PLINK files - .fam
+          </span>
+          <br />
+          Show URL for
+           
+          <button
+            aria-label="Show Google URL for Variants and unrelated sample PLINK files - .fam"
+            className="c21"
+            onClick={[Function]}
+            type="button"
+          >
+            Google
+          </button>
+           / 
+          <button
+            aria-label="Show Amazon URL for Variants and unrelated sample PLINK files - .fam"
+            className="c21"
+            onClick={[Function]}
+            type="button"
+          >
+            Amazon
+          </button>
+           / 
+          <button
+            aria-label="Show Microsoft URL for Variants and unrelated sample PLINK files - .fam"
             className="c21"
             onClick={[Function]}
             type="button"
@@ -14070,7 +14142,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Population-level mean fixation index table from Google"
               className="c10"
-              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/mean_fst.txt"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/mean_fst.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14080,7 +14152,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Population-level mean fixation index table from Amazon"
               className="c10"
-              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/mean_fst.txt"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/mean_fst.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14090,7 +14162,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Population-level mean fixation index table from Microsoft"
               className="c10"
-              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg/f2_fst/mean_fst.txt"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg_v2/f2_fst/mean_fst.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14559,7 +14631,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Post-QC site frequency spectrum table from Google"
               className="c10"
-              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/sfs_post_qc.txt"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/sfs_post_qc.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14569,7 +14641,7 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Post-QC site frequency spectrum table from Amazon"
               className="c10"
-              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/sfs_post_qc.txt"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/sfs_post_qc.txt"
               rel="noopener noreferrer"
               target="_blank"
             >
@@ -14579,7 +14651,238 @@ exports[`Downloads Page has no unexpected changes 1`] = `
             <a
               aria-label="Download Post-QC site frequency spectrum table from Microsoft"
               className="c10"
-              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg/plot_datasets/sfs_post_qc.txt"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/release/3.1/secondary_analyses/hgdp_1kg_v2/plot_datasets/sfs_post_qc.txt"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Microsoft
+            </a>
+          </span>
+        </li>
+        <li
+          className="c20"
+        >
+          <span>
+            Phased haplotype ChrX PAR1
+          </span>
+          <br />
+          <span>
+            Download from
+             
+            <a
+              aria-label="Download Phased haplotype ChrX PAR1 from Google"
+              className="c10"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par1.shapeit5_common.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Google
+            </a>
+             / 
+            <a
+              aria-label="Download Phased haplotype ChrX PAR1 from Amazon"
+              className="c10"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par1.shapeit5_common.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Amazon
+            </a>
+             / 
+            <a
+              aria-label="Download Phased haplotype ChrX PAR1 from Microsoft"
+              className="c10"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par1.shapeit5_common.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Microsoft
+            </a>
+          </span>
+          <br />
+          <span>
+            Download 
+            CSI
+             from
+             
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX PAR1 from Google"
+              className="c10"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par1.shapeit5_common.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Google
+            </a>
+             / 
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX PAR1 from Amazon"
+              className="c10"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par1.shapeit5_common.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Amazon
+            </a>
+             / 
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX PAR1 from Microsoft"
+              className="c10"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par1.shapeit5_common.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Microsoft
+            </a>
+          </span>
+        </li>
+        <li
+          className="c20"
+        >
+          <span>
+            Phased haplotype ChrX PAR2
+          </span>
+          <br />
+          <span>
+            Download from
+             
+            <a
+              aria-label="Download Phased haplotype ChrX PAR2 from Google"
+              className="c10"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par2.shapeit5_common.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Google
+            </a>
+             / 
+            <a
+              aria-label="Download Phased haplotype ChrX PAR2 from Amazon"
+              className="c10"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par2.shapeit5_common.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Amazon
+            </a>
+             / 
+            <a
+              aria-label="Download Phased haplotype ChrX PAR2 from Microsoft"
+              className="c10"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par2.shapeit5_common.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Microsoft
+            </a>
+          </span>
+          <br />
+          <span>
+            Download 
+            CSI
+             from
+             
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX PAR2 from Google"
+              className="c10"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par2.shapeit5_common.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Google
+            </a>
+             / 
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX PAR2 from Amazon"
+              className="c10"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par2.shapeit5_common.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Amazon
+            </a>
+             / 
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX PAR2 from Microsoft"
+              className="c10"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_par2.shapeit5_common.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Microsoft
+            </a>
+          </span>
+        </li>
+        <li
+          className="c20"
+        >
+          <span>
+            Phased haplotype ChrX Non-PAR
+          </span>
+          <br />
+          <span>
+            Download from
+             
+            <a
+              aria-label="Download Phased haplotype ChrX Non-PAR from Google"
+              className="c10"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_non_par.full.shapeit5_rare.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Google
+            </a>
+             / 
+            <a
+              aria-label="Download Phased haplotype ChrX Non-PAR from Amazon"
+              className="c10"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_non_par.full.shapeit5_rare.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Amazon
+            </a>
+             / 
+            <a
+              aria-label="Download Phased haplotype ChrX Non-PAR from Microsoft"
+              className="c10"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_non_par.full.shapeit5_rare.bcf"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Microsoft
+            </a>
+          </span>
+          <br />
+          <span>
+            Download 
+            CSI
+             from
+             
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX Non-PAR from Google"
+              className="c10"
+              href="https://storage.googleapis.com/gcp-public-data--gnomad/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_non_par.full.shapeit5_rare.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Google
+            </a>
+             / 
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX Non-PAR from Amazon"
+              className="c10"
+              href="https://gnomad-public-us-east-1.s3.amazonaws.com/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_non_par.full.shapeit5_rare.bcf.csi"
+              rel="noopener noreferrer"
+              target="_blank"
+            >
+              Amazon
+            </a>
+             / 
+            <a
+              aria-label="Download CSI file for Phased haplotype ChrX Non-PAR from Microsoft"
+              className="c10"
+              href="https://datasetgnomad.blob.core.windows.net/dataset/resources/hgdp_1kg/phased_haplotypes_v2/hgdp1kgp_chrX_non_par.full.shapeit5_rare.bcf.csi"
               rel="noopener noreferrer"
               target="_blank"
             >