From c1a11c27c2dc9822e9406bfaf006790e8f998b3c Mon Sep 17 00:00:00 2001 From: Phil Darnowsky Date: Thu, 26 Oct 2023 17:31:47 -0400 Subject: [PATCH] Change user-facing references to dataset to say "v4 SVs" This includes the dataset ID `gnomad_sv_v4` itself as that appears in URLs. --- .../structural-variants/sv-effect-overview.md | 8 +- .../ConstraintTable.spec.tsx.snap | 12 +- browser/src/DatasetSelector.tsx | 10 +- .../__snapshots__/GenePage.spec.tsx.snap | 126 ++++----- ...riantCooccurrenceCountsTable.spec.tsx.snap | 2 +- .../MitochondrialVariantPage.spec.tsx.snap | 2 +- .../__snapshots__/ReadData.spec.tsx.snap | 8 +- ...chondrialRegionCoverageTrack.spec.tsx.snap | 4 +- ...itochondrialVariantsInRegion.spec.tsx.snap | 2 +- .../__snapshots__/RegionPage.spec.tsx.snap | 20 +- .../RegionPageContainer.spec.tsx.snap | 2 +- browser/src/Searchbox.spec.tsx | 2 +- browser/src/Searchbox.tsx | 6 +- .../StructuralVariantPage.spec.tsx.snap | 144 +++++----- ...drialTranscriptCoverageTrack.spec.tsx.snap | 4 +- ...hondrialVariantsInTranscript.spec.tsx.snap | 2 +- .../TranscriptPage.spec.tsx.snap | 2 +- .../TranscriptPageContainer.spec.tsx.snap | 2 +- .../DatasetSelector.spec.tsx.snap | 252 +++++++++--------- .../src/__snapshots__/HomePage.spec.tsx.snap | 4 +- .../src/__snapshots__/NavBar.spec.tsx.snap | 4 +- .../src/__snapshots__/Searchbox.spec.tsx.snap | 72 ++--- browser/src/identifiers.spec.ts | 4 +- browser/src/identifiers.ts | 6 +- browser/src/variantFeedback.spec.ts | 2 +- dataset-metadata/metadata.spec.ts | 2 +- dataset-metadata/metadata.ts | 36 +-- dataset-metadata/sampleCounts.ts | 2 +- .../src/graphql/types/dataset-id.graphql | 2 +- .../structural-variant-queries.spec.ts | 8 +- .../src/queries/structural-variant-queries.ts | 4 +- 31 files changed, 378 insertions(+), 378 deletions(-) diff --git a/browser/help/topics/structural-variants/sv-effect-overview.md b/browser/help/topics/structural-variants/sv-effect-overview.md index c4df5b4b4..1eadc85c3 100644 --- a/browser/help/topics/structural-variants/sv-effect-overview.md +++ b/browser/help/topics/structural-variants/sv-effect-overview.md @@ -14,17 +14,17 @@ The functional consequence per SV was determined in the order below: ### Main functional consequences 1. ![](https://placehold.it/15/D43925/000000?text=+) **Predicted loss-of-function (pLoF)**: SV is predicted to delete the gene or truncate the gene product. -2. ![](https://placehold.it/15/7459B2/000000?text=+) **Intragenic exonic duplication (IED)**: SV is predicted to result in duplicated exons within the gene, without extending beyond the boundaries of the open reading frame. (New in gnomAD v3) -3. **Partial exon duplication (PED)**: SV is predicted to duplicate part of one or more exons without resulting in a whole-gene copy gain. (New in gnomAD v3) +2. ![](https://placehold.it/15/7459B2/000000?text=+) **Intragenic exonic duplication (IED)**: SV is predicted to result in duplicated exons within the gene, without extending beyond the boundaries of the open reading frame. (New in gnomAD v4) +3. **Partial exon duplication (PED)**: SV is predicted to duplicate part of one or more exons without resulting in a whole-gene copy gain. (New in gnomAD v4) 4. ![](https://placehold.it/15/2376B2/000000?text=+) **Copy gain (CG)**: SV is predicted to result in an entire additional intact copy of the gene. ### Other consequences -4. **Transcription start site duplication**: SV is predicted to result in a duplication of a transcription start site but not result in any other, more severe consequences. (New in gnomAD v3). +4. **Transcription start site duplication**: SV is predicted to result in a duplication of a transcription start site but not result in any other, more severe consequences. (New in gnomAD v4). 5. **MCNV overlap**: MCNV overlaps one or more protein-coding exons; exact consequence depends on the number of copies and their orientation. 6. **Partial duplication**: SV is predicted to partially duplicate the gene while leaving the original copy of the gene intact. -7. **Exonic breakend**: breakend localizes to exonic locus, but consequence is unclear as SV is incompletely resolved. (New in gnomAD v3). +7. **Exonic breakend**: breakend localizes to exonic locus, but consequence is unclear as SV is incompletely resolved. (New in gnomAD v4). 8. **UTR**: SV does not directly disrupt coding sequence, but overlaps one of the gene's untranslated regions (UTRs). 9. **Promoter**: SV does not directly disrupt coding sequence or promoter, but is within 2kb of the gene's transcription start site. 10. **Inversion span**: gene is entirely spanned by an inversion SV without being directly disrupted. diff --git a/browser/src/ConstraintTable/__snapshots__/ConstraintTable.spec.tsx.snap b/browser/src/ConstraintTable/__snapshots__/ConstraintTable.spec.tsx.snap index 06240663f..2505d48e5 100644 --- a/browser/src/ConstraintTable/__snapshots__/ConstraintTable.spec.tsx.snap +++ b/browser/src/ConstraintTable/__snapshots__/ConstraintTable.spec.tsx.snap @@ -6510,37 +6510,37 @@ exports[`ConstraintTable with "gnomad_sv_r2_1_non_neuro" dataset selected with a

`; -exports[`ConstraintTable with "gnomad_sv_r3" dataset selected and gene with available constraint has no unexpected changes 1`] = ` +exports[`ConstraintTable with "gnomad_sv_r4" dataset selected and gene with available constraint has no unexpected changes 1`] = `

Constraint not yet available for gnomAD v3.

`; -exports[`ConstraintTable with "gnomad_sv_r3" dataset selected and transcript with available constraint has no unexpected changes 1`] = ` +exports[`ConstraintTable with "gnomad_sv_r4" dataset selected and transcript with available constraint has no unexpected changes 1`] = `

Constraint not yet available for gnomAD v3.

`; -exports[`ConstraintTable with "gnomad_sv_r3" dataset selected with a minimal gene has no unexpected changes 1`] = ` +exports[`ConstraintTable with "gnomad_sv_r4" dataset selected with a minimal gene has no unexpected changes 1`] = `

Constraint not yet available for gnomAD v3.

`; -exports[`ConstraintTable with "gnomad_sv_r3" dataset selected with a minimal transcript has no unexpected changes 1`] = ` +exports[`ConstraintTable with "gnomad_sv_r4" dataset selected with a minimal transcript has no unexpected changes 1`] = `

Constraint not yet available for gnomAD v3.

`; -exports[`ConstraintTable with "gnomad_sv_r3" dataset selected with a mitochondrial gene has no unexpected changes 1`] = ` +exports[`ConstraintTable with "gnomad_sv_r4" dataset selected with a mitochondrial gene has no unexpected changes 1`] = `

Constraint not yet available for gnomAD v3.

`; -exports[`ConstraintTable with "gnomad_sv_r3" dataset selected with a mitochondrial transcript has no unexpected changes 1`] = ` +exports[`ConstraintTable with "gnomad_sv_r4" dataset selected with a mitochondrial transcript has no unexpected changes 1`] = `

Constraint not yet available for gnomAD v3.

diff --git a/browser/src/DatasetSelector.tsx b/browser/src/DatasetSelector.tsx index 2ccaf45bc..85df2656e 100644 --- a/browser/src/DatasetSelector.tsx +++ b/browser/src/DatasetSelector.tsx @@ -594,11 +594,11 @@ const DatasetSelector = withRouter(({ datasetOptions, history, selectedDataset } label: 'More datasets', children: [ { - id: 'gnomad_sv_r3', - label: labelForDataset('gnomad_sv_r3'), - url: datasetLink('gnomad_sv_r3'), - description: `${sampleCounts.gnomad_sv_r3.total.toLocaleString()} samples`, - childReferenceGenome: referenceGenome('gnomad_sv_r3'), + id: 'gnomad_sv_r4', + label: labelForDataset('gnomad_sv_r4'), + url: datasetLink('gnomad_sv_r4'), + description: `${sampleCounts.gnomad_sv_r4.total.toLocaleString()} samples`, + childReferenceGenome: referenceGenome('gnomad_sv_r4'), }, { id: 'gnomad_sv_r2_1', diff --git a/browser/src/GenePage/__snapshots__/GenePage.spec.tsx.snap b/browser/src/GenePage/__snapshots__/GenePage.spec.tsx.snap index 572a4f498..7288a560d 100644 --- a/browser/src/GenePage/__snapshots__/GenePage.spec.tsx.snap +++ b/browser/src/GenePage/__snapshots__/GenePage.spec.tsx.snap @@ -347,13 +347,13 @@ exports[`GenePage with SV dataset "gnomad_sv_r2_1" has no unexpected changes 1`]
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -1772,13 +1772,13 @@ exports[`GenePage with SV dataset "gnomad_sv_r2_1_controls" has no unexpected ch
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -3197,13 +3197,13 @@ exports[`GenePage with SV dataset "gnomad_sv_r2_1_non_neuro" has no unexpected c
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -4275,7 +4275,7 @@ exports[`GenePage with SV dataset "gnomad_sv_r2_1_non_neuro" has no unexpected c
    `; -exports[`GenePage with SV dataset "gnomad_sv_r3" has no unexpected changes 1`] = ` +exports[`GenePage with SV dataset "gnomad_sv_r4" has no unexpected changes 1`] = `
    @@ -4577,12 +4577,12 @@ exports[`GenePage with SV dataset "gnomad_sv_r3" has no unexpected changes 1`] = - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -6046,13 +6046,13 @@ exports[`GenePage with non-SV dataset "exac" has no unexpected changes 1`] = `
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -7505,13 +7505,13 @@ exports[`GenePage with non-SV dataset "gnomad_r2_1" has no unexpected changes 1`
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -8964,13 +8964,13 @@ exports[`GenePage with non-SV dataset "gnomad_r2_1_controls" has no unexpected c
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -10423,13 +10423,13 @@ exports[`GenePage with non-SV dataset "gnomad_r2_1_non_cancer" has no unexpected
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -11882,13 +11882,13 @@ exports[`GenePage with non-SV dataset "gnomad_r2_1_non_neuro" has no unexpected
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -13341,13 +13341,13 @@ exports[`GenePage with non-SV dataset "gnomad_r2_1_non_topmed" has no unexpected
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -14755,12 +14755,12 @@ exports[`GenePage with non-SV dataset "gnomad_r3" has no unexpected changes 1`] - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -16213,12 +16213,12 @@ exports[`GenePage with non-SV dataset "gnomad_r3_controls_and_biobanks" has no u - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -17671,12 +17671,12 @@ exports[`GenePage with non-SV dataset "gnomad_r3_non_cancer" has no unexpected c - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -19129,12 +19129,12 @@ exports[`GenePage with non-SV dataset "gnomad_r3_non_neuro" has no unexpected ch - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -20587,12 +20587,12 @@ exports[`GenePage with non-SV dataset "gnomad_r3_non_topmed" has no unexpected c - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -22045,12 +22045,12 @@ exports[`GenePage with non-SV dataset "gnomad_r3_non_v2" has no unexpected chang - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    diff --git a/browser/src/GenePage/__snapshots__/VariantCooccurrenceCountsTable.spec.tsx.snap b/browser/src/GenePage/__snapshots__/VariantCooccurrenceCountsTable.spec.tsx.snap index 5d904c5d6..d9a796fb8 100644 --- a/browser/src/GenePage/__snapshots__/VariantCooccurrenceCountsTable.spec.tsx.snap +++ b/browser/src/GenePage/__snapshots__/VariantCooccurrenceCountsTable.spec.tsx.snap @@ -2042,7 +2042,7 @@ exports[`VariantCoocurrenceCountsTable with non v2 dataset "gnomad_r3_non_v2" ha `; -exports[`VariantCoocurrenceCountsTable with non v2 dataset "gnomad_sv_r3" has no unexpected changes and renders as placeholder text 1`] = ` +exports[`VariantCoocurrenceCountsTable with non v2 dataset "gnomad_sv_r4" has no unexpected changes and renders as placeholder text 1`] = `

    Variant co-occurrence is only available for gnomAD v2. diff --git a/browser/src/MitochondrialVariantPage/__snapshots__/MitochondrialVariantPage.spec.tsx.snap b/browser/src/MitochondrialVariantPage/__snapshots__/MitochondrialVariantPage.spec.tsx.snap index 3e5facd03..14e3d777c 100644 --- a/browser/src/MitochondrialVariantPage/__snapshots__/MitochondrialVariantPage.spec.tsx.snap +++ b/browser/src/MitochondrialVariantPage/__snapshots__/MitochondrialVariantPage.spec.tsx.snap @@ -72657,7 +72657,7 @@ exports[`MitochondrialVariantPage with dataset gnomad_sv_r2_1_non_neuro has no u

    `; -exports[`MitochondrialVariantPage with dataset gnomad_sv_r3 has no unexpected changes 1`] = ` +exports[`MitochondrialVariantPage with dataset gnomad_sv_r4 has no unexpected changes 1`] = `
    diff --git a/browser/src/ReadData/__snapshots__/ReadData.spec.tsx.snap b/browser/src/ReadData/__snapshots__/ReadData.spec.tsx.snap index bac4dce27..907dcd526 100644 --- a/browser/src/ReadData/__snapshots__/ReadData.spec.tsx.snap +++ b/browser/src/ReadData/__snapshots__/ReadData.spec.tsx.snap @@ -3503,7 +3503,7 @@ exports[`ReadData with "gnomad_sv_r2_1_non_neuro" dataset selected queries again " `; -exports[`ReadData with "gnomad_sv_r3" dataset selected has no unexpected changes with exome and genome data both missing 1`] = ` +exports[`ReadData with "gnomad_sv_r4" dataset selected has no unexpected changes with exome and genome data both missing 1`] = `

    No read data available for this variant. @@ -3511,7 +3511,7 @@ exports[`ReadData with "gnomad_sv_r3" dataset selected has no unexpected changes

    `; -exports[`ReadData with "gnomad_sv_r3" dataset selected has no unexpected changes with exome data present 1`] = ` +exports[`ReadData with "gnomad_sv_r4" dataset selected has no unexpected changes with exome data present 1`] = ` .c2 { box-sizing: border-box; height: calc(2em + 2px); @@ -3687,10 +3687,10 @@ exports[`ReadData with "gnomad_sv_r3" dataset selected has no unexpected changes
    `; -exports[`ReadData with "gnomad_sv_r3" dataset selected queries against the correct dataset 1`] = ` +exports[`ReadData with "gnomad_sv_r4" dataset selected queries against the correct dataset 1`] = ` " query ReadData { - variant_0: variantReads(dataset: gnomad_sv_r3, variantId: "123-45-A-G") { + variant_0: variantReads(dataset: gnomad_sv_r4, variantId: "123-45-A-G") { exome { bamPath category diff --git a/browser/src/RegionPage/__snapshots__/MitochondrialRegionCoverageTrack.spec.tsx.snap b/browser/src/RegionPage/__snapshots__/MitochondrialRegionCoverageTrack.spec.tsx.snap index 7e8d564cd..040003272 100644 --- a/browser/src/RegionPage/__snapshots__/MitochondrialRegionCoverageTrack.spec.tsx.snap +++ b/browser/src/RegionPage/__snapshots__/MitochondrialRegionCoverageTrack.spec.tsx.snap @@ -351,7 +351,7 @@ query MitochondrialCoverageInRegion($start: Int!, $stop: Int!, $datasetId: Datas `; -exports[`MitochondrialRegionCoverageTrack with dataset gnomad_sv_r3 queries with appropriate params 1`] = ` +exports[`MitochondrialRegionCoverageTrack with dataset gnomad_sv_r4 queries with appropriate params 1`] = ` `; -exports[`RegionPage with "gnomad_sv_r3" dataset has no unexpected changes for a mitochondrial region 1`] = ` +exports[`RegionPage with "gnomad_sv_r4" dataset has no unexpected changes for a mitochondrial region 1`] = ` } - selectedDataset="gnomad_sv_r3" + selectedDataset="gnomad_sv_r4" > M-345-456 @@ -4302,7 +4302,7 @@ exports[`RegionPage with "gnomad_sv_r3" dataset has no unexpected changes for a width={994} > @@ -4329,7 +4329,7 @@ exports[`RegionPage with "gnomad_sv_r3" dataset has no unexpected changes for a /> `; -exports[`RegionPage with "gnomad_sv_r3" dataset has no unexpected changes for a non-mitochondrial region 1`] = ` +exports[`RegionPage with "gnomad_sv_r4" dataset has no unexpected changes for a non-mitochondrial region 1`] = ` } - selectedDataset="gnomad_sv_r3" + selectedDataset="gnomad_sv_r4" > 12-345-456 @@ -4451,7 +4451,7 @@ exports[`RegionPage with "gnomad_sv_r3" dataset has no unexpected changes for a > `; -exports[`RegionPageContainer with dataset gnomad_sv_r3 queries API with correct parameters 1`] = ` +exports[`RegionPageContainer with dataset gnomad_sv_r4 queries API with correct parameters 1`] = ` { gnomad_sv_r2_1: 'gnomad_sv_r2_1', gnomad_sv_r2_1_controls: 'gnomad_sv_r2_1', gnomad_sv_r2_1_non_neuro: 'gnomad_sv_r2_1', - gnomad_sv_r3: 'gnomad_sv_r3', + gnomad_sv_r4: 'gnomad_sv_r4', } test('has correct default dataset', () => { diff --git a/browser/src/Searchbox.tsx b/browser/src/Searchbox.tsx index 06e27dbf5..ff7f9769f 100644 --- a/browser/src/Searchbox.tsx +++ b/browser/src/Searchbox.tsx @@ -38,8 +38,8 @@ const getDefaultSearchDataset = (selectedDataset: any) => { if (selectedDataset === 'exac') { return 'exac' } - if (selectedDataset === 'gnomad_sv_r3') { - return 'gnomad_sv_r3' + if (selectedDataset === 'gnomad_sv_r4') { + return 'gnomad_sv_r4' } } return 'gnomad_r2_1' @@ -85,7 +85,7 @@ export default withRouter((props: any) => { > - + diff --git a/browser/src/StructuralVariantPage/__snapshots__/StructuralVariantPage.spec.tsx.snap b/browser/src/StructuralVariantPage/__snapshots__/StructuralVariantPage.spec.tsx.snap index 19aa05506..e1d190dda 100644 --- a/browser/src/StructuralVariantPage/__snapshots__/StructuralVariantPage.spec.tsx.snap +++ b/browser/src/StructuralVariantPage/__snapshots__/StructuralVariantPage.spec.tsx.snap @@ -79,13 +79,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with a complex varian
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -673,13 +673,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with interchromosomal
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -1265,13 +1265,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with interchromosomal
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -1857,13 +1857,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with non-interchromos
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -2431,13 +2431,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with non-interchromos
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -3005,13 +3005,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with non-interchromos
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -3577,13 +3577,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with non-interchromos
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -4151,13 +4151,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1 with non-interchromos
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -5257,13 +5257,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with a compl
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -5851,13 +5851,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with interch
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -6443,13 +6443,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with interch
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -7035,13 +7035,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with non-int
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -7609,13 +7609,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with non-int
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -8183,13 +8183,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with non-int
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -8755,13 +8755,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with non-int
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -9329,13 +9329,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_controls with non-int
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -10435,13 +10435,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with a comp
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -11029,13 +11029,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with interc
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -11621,13 +11621,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with interc
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -12213,13 +12213,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with non-in
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -12787,13 +12787,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with non-in
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -13361,13 +13361,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with non-in
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -13933,13 +13933,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with non-in
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -14507,13 +14507,13 @@ exports[`StructuralVariantPage with dataset gnomad_sv_r2_1_non_neuro with non-in
  • - gnomAD SVs v3 + gnomAD SVs v4
    diff --git a/browser/src/TranscriptPage/__snapshots__/MitochondrialTranscriptCoverageTrack.spec.tsx.snap b/browser/src/TranscriptPage/__snapshots__/MitochondrialTranscriptCoverageTrack.spec.tsx.snap index d2b7aceec..3b1e3cefa 100644 --- a/browser/src/TranscriptPage/__snapshots__/MitochondrialTranscriptCoverageTrack.spec.tsx.snap +++ b/browser/src/TranscriptPage/__snapshots__/MitochondrialTranscriptCoverageTrack.spec.tsx.snap @@ -342,7 +342,7 @@ query MitochondrialCoverageInTranscript($transcriptId: String!, $datasetId: Data `; -exports[`MitochondrialTranscriptCoverageTrack with dataset gnomad_sv_r3 queries with proper parameters 1`] = ` +exports[`MitochondrialTranscriptCoverageTrack with dataset gnomad_sv_r4 queries with proper parameters 1`] = ` `; -exports[`TranscriptPage with dataset "gnomad_sv_r3" has no unexpected changes 1`] = ` +exports[`TranscriptPage with dataset "gnomad_sv_r4" has no unexpected changes 1`] = `
    diff --git a/browser/src/TranscriptPage/__snapshots__/TranscriptPageContainer.spec.tsx.snap b/browser/src/TranscriptPage/__snapshots__/TranscriptPageContainer.spec.tsx.snap index 44b3199de..2d6a885e2 100644 --- a/browser/src/TranscriptPage/__snapshots__/TranscriptPageContainer.spec.tsx.snap +++ b/browser/src/TranscriptPage/__snapshots__/TranscriptPageContainer.spec.tsx.snap @@ -14964,4 +14964,4 @@ exports[`TranscriptPageContainer with dataset gnomad_sv_r2_1_controls has no une exports[`TranscriptPageContainer with dataset gnomad_sv_r2_1_non_neuro has no unexpected changes 1`] = `null`; -exports[`TranscriptPageContainer with dataset gnomad_sv_r3 has no unexpected changes 1`] = `null`; +exports[`TranscriptPageContainer with dataset gnomad_sv_r4 has no unexpected changes 1`] = `null`; diff --git a/browser/src/__snapshots__/DatasetSelector.spec.tsx.snap b/browser/src/__snapshots__/DatasetSelector.spec.tsx.snap index 55499d095..2ac5fa308 100644 --- a/browser/src/__snapshots__/DatasetSelector.spec.tsx.snap +++ b/browser/src/__snapshots__/DatasetSelector.spec.tsx.snap @@ -480,13 +480,13 @@ exports[`DataSelector with "exac" dataset selected has no unexpected changes 1`]
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -1038,13 +1038,13 @@ exports[`DataSelector with "exac" dataset selected has no unexpected changes whe
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -1596,13 +1596,13 @@ exports[`DataSelector with "gnomad_r2_1" dataset selected has no unexpected chan
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -2154,13 +2154,13 @@ exports[`DataSelector with "gnomad_r2_1" dataset selected has no unexpected chan
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -2712,13 +2712,13 @@ exports[`DataSelector with "gnomad_r2_1_controls" dataset selected has no unexpe
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -3270,13 +3270,13 @@ exports[`DataSelector with "gnomad_r2_1_controls" dataset selected has no unexpe
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -3828,13 +3828,13 @@ exports[`DataSelector with "gnomad_r2_1_non_cancer" dataset selected has no unex
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -4386,13 +4386,13 @@ exports[`DataSelector with "gnomad_r2_1_non_cancer" dataset selected has no unex
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -4944,13 +4944,13 @@ exports[`DataSelector with "gnomad_r2_1_non_neuro" dataset selected has no unexp
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -5502,13 +5502,13 @@ exports[`DataSelector with "gnomad_r2_1_non_neuro" dataset selected has no unexp
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -6060,13 +6060,13 @@ exports[`DataSelector with "gnomad_r2_1_non_topmed" dataset selected has no unex
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -6618,13 +6618,13 @@ exports[`DataSelector with "gnomad_r2_1_non_topmed" dataset selected has no unex
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -7131,12 +7131,12 @@ exports[`DataSelector with "gnomad_r3" dataset selected has no unexpected change - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -7689,12 +7689,12 @@ exports[`DataSelector with "gnomad_r3" dataset selected has no unexpected change - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -8247,12 +8247,12 @@ exports[`DataSelector with "gnomad_r3_controls_and_biobanks" dataset selected ha - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -8805,12 +8805,12 @@ exports[`DataSelector with "gnomad_r3_controls_and_biobanks" dataset selected ha - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -9363,12 +9363,12 @@ exports[`DataSelector with "gnomad_r3_non_cancer" dataset selected has no unexpe - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -9921,12 +9921,12 @@ exports[`DataSelector with "gnomad_r3_non_cancer" dataset selected has no unexpe - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -10479,12 +10479,12 @@ exports[`DataSelector with "gnomad_r3_non_neuro" dataset selected has no unexpec - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -11037,12 +11037,12 @@ exports[`DataSelector with "gnomad_r3_non_neuro" dataset selected has no unexpec - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -11595,12 +11595,12 @@ exports[`DataSelector with "gnomad_r3_non_topmed" dataset selected has no unexpe - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -12153,12 +12153,12 @@ exports[`DataSelector with "gnomad_r3_non_topmed" dataset selected has no unexpe - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -12711,12 +12711,12 @@ exports[`DataSelector with "gnomad_r3_non_v2" dataset selected has no unexpected - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -13269,12 +13269,12 @@ exports[`DataSelector with "gnomad_r3_non_v2" dataset selected has no unexpected - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -13872,13 +13872,13 @@ exports[`DataSelector with "gnomad_sv_r2_1" dataset selected has no unexpected c
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -14430,13 +14430,13 @@ exports[`DataSelector with "gnomad_sv_r2_1" dataset selected has no unexpected c
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -14988,13 +14988,13 @@ exports[`DataSelector with "gnomad_sv_r2_1_controls" dataset selected has no une
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -15546,13 +15546,13 @@ exports[`DataSelector with "gnomad_sv_r2_1_controls" dataset selected has no une
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -16104,13 +16104,13 @@ exports[`DataSelector with "gnomad_sv_r2_1_non_neuro" dataset selected has no un
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -16662,13 +16662,13 @@ exports[`DataSelector with "gnomad_sv_r2_1_non_neuro" dataset selected has no un
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -16740,7 +16740,7 @@ exports[`DataSelector with "gnomad_sv_r2_1_non_neuro" dataset selected has no un `; -exports[`DataSelector with "gnomad_sv_r3" dataset selected has no unexpected changes 1`] = ` +exports[`DataSelector with "gnomad_sv_r4" dataset selected has no unexpected changes 1`] = ` .c0 { display: -webkit-box; display: -webkit-flex; @@ -17175,12 +17175,12 @@ exports[`DataSelector with "gnomad_sv_r3" dataset selected has no unexpected cha - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    @@ -17298,7 +17298,7 @@ exports[`DataSelector with "gnomad_sv_r3" dataset selected has no unexpected cha `; -exports[`DataSelector with "gnomad_sv_r3" dataset selected has no unexpected changes when showing all possible datasets 1`] = ` +exports[`DataSelector with "gnomad_sv_r4" dataset selected has no unexpected changes when showing all possible datasets 1`] = ` .c0 { display: -webkit-box; display: -webkit-flex; @@ -17733,12 +17733,12 @@ exports[`DataSelector with "gnomad_sv_r3" dataset selected has no unexpected cha - gnomAD SVs v3 + gnomAD SVs v4
  • - gnomAD SVs v3 + gnomAD SVs v4
    diff --git a/browser/src/__snapshots__/HomePage.spec.tsx.snap b/browser/src/__snapshots__/HomePage.spec.tsx.snap index 0495ad2fd..9fb17ac45 100644 --- a/browser/src/__snapshots__/HomePage.spec.tsx.snap +++ b/browser/src/__snapshots__/HomePage.spec.tsx.snap @@ -206,9 +206,9 @@ exports[`Home Page has no unexpected changes 1`] = ` gnomAD v3.1.2 `; -exports[`Searchbox with selected dataset gnomad_sv_r3 has no unexpected changes 1`] = ` +exports[`Searchbox with selected dataset gnomad_sv_r4 has no unexpected changes 1`] = `