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My command: ./gatk VariantFiltration -V ~/sample.vcf.gz -O ~/filtered.vcf.gz -R ~/reference2/Homo_sapiens_assembly38.fasta --filter-expression "DP >= 10 && MBQ >= 20"
it gives me a lot of variants out of my criteria in my condition. why and how to fix it ? the output I work on is the output of mutect
The text was updated successfully, but these errors were encountered:
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My command:
./gatk VariantFiltration -V ~/sample.vcf.gz -O ~/filtered.vcf.gz -R ~/reference2/Homo_sapiens_assembly38.fasta --filter-expression "DP >= 10 && MBQ >= 20"
it gives me a lot of variants out of my criteria in my condition. why and how to fix it ? the output I work on is the output of mutect
The text was updated successfully, but these errors were encountered: