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Investigate algorithm for SV concordance #4197

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lynnpais opened this issue Jun 25, 2024 · 2 comments
Open

Investigate algorithm for SV concordance #4197

lynnpais opened this issue Jun 25, 2024 · 2 comments
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@lynnpais
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The GATK SV clustering algorithm is here:
https://gatk.broadinstitute.org/hc/en-us/articles/4418051427867-SVCluster-BETA

Do we need their concordance code? Check with Alba.
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Closed in favor of running GATK SVConcordance: https://github.com/broadinstitute/seqr-pipeline-airflow/issues/260

@lynnpais lynnpais reopened this Aug 13, 2024
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Running SV concordance in pipeline. Continue to investigate how it works. There is known work for adding to export of annotations call-level genotype information.

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