CHANGES.TXT

= v. 1.40=
    _04/December/2014_
    * Add intervals from_gtf.py to dump intervals from GTF files
= v. 1.31=
    _20/November/2014_
    * Handles latest Ensembl GTF (version 74)
	* Add gene / transcript source fields
	* Better debug display (Removing irrelevant fields)

= v. 1.09=
    _12/July/2012_
    ==Bug Fix:==
            * Remove used slot "transcripts_types" from t_gene: use t_gene.get_transcript_type_names() instead
= v. 1.08=
    _02/November/2011_
    ==Bug Fix:==
            * Add transcript type (source binary field hijacked by Ensembl)
= v. 1.07=
    _31/June/2010_
    ==Bug Fix:==
            * dump_object recurses properly

= v. 1.06=
    _15/June/2010_
    ==New Features:==
            * Function to index genes by gene_id
            * Function to index transcripts by cdna_id or prot_id
    ==Documentation:==
            * Completely reorganised for clarity
            * Example code to find genes or transcripts which overlap specified regions


= v. 1.04=
    _15/June/2010_
    ==Bug Fix:==
            * Loading of transcript indices and coding_indices now correct

= v. 1.0=
    _11/March/2010_
    Initial Release in Oxford