From dfbf0e45eb2246de92702fcddeda967d403e8973 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jon=20Haitz=20Legarreta=20Gorro=C3=B1o?= Date: Sun, 18 Feb 2024 16:43:36 -0500 Subject: [PATCH 1/2] DOC: Fix episode links in `README` content table Fix episode links in `README` file content table: links have changed after the transition to the Carpentries Workbench infrastructure. --- README.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/README.md b/README.md index 046f9a58..146fd190 100644 --- a/README.md +++ b/README.md @@ -94,15 +94,15 @@ To cite this lesson, please consult with [CITATION](CITATION) [slack_channel_status]: https://img.shields.io/badge/Slack_Channel-neuroimaging-E01563.svg [binder_url]: https://mybinder.org/v2/gh/carpentries-incubator/SDC-BIDS-dMRI/main?urlpath=lab/tree/code [binder_svg]: https://mybinder.org/badge_logo.svg -[episode01]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/introduction/index.html -[episode02]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/preprocessing/index.html -[episode03]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/local_orientation_reconstruction/index.html -[episode04]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/diffusion_tensor_imaging/index.html -[episode05]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/constrained_spherical_deconvolution/index.html -[episode06]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/tractography/index.html -[episode07]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/local_tractography/index.html -[episode08]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/deterministic_tractography/index.html -[episode09]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/probabilistic_tractography/index.html +[episode01]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/introduction.html +[episode02]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/preprocessing.html +[episode03]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/local_orientation_reconstruction.html +[episode04]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/diffusion_tensor_imaging.html +[episode05]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/constrained_spherical_deconvolution.html +[episode06]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/tractography.html +[episode07]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/local_tractography.html +[episode08]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/deterministic_tractography.html +[episode09]: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/probabilistic_tractography.html [lesson-example]: https://carpentries.github.io/lesson-example [link_issues]: https://github.com/conp-pcno-training/SDC-BIDS-dMRI/issues [jason_kai]: https://github.com/kaitj From 9310086bd5e99c0275607ca683555790c905e0b8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jon=20Haitz=20Legarreta=20Gorro=C3=B1o?= Date: Sun, 18 Feb 2024 16:47:56 -0500 Subject: [PATCH 2/2] DOC: Add local and deterministic tractography questions to README table Add local and deterministic tractography questions to the episode table in the `README` file. --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 146fd190..e1c563bd 100644 --- a/README.md +++ b/README.md @@ -45,8 +45,8 @@ This lesson teaches: | | 30 | [3\.1 Diffusion Tensor Imaging (DTI)][episode04] | What is diffusion tensor imaging?
What metrics can be derived from DTI? | | | 30 | [3\.2 Constrained Spherical Deconvolution (CSD)][episode05] | What is Constrained Spherical Deconvolution (CSD)?
What does CSD offer compared to DTI? | | **Tractography** | 30 | [4 Tractography][episode06] | What information can dMRI provide at the long range level? | -| | 30 | [4\.1 Local tractography][episode07] | FIXME | -| | 30 | [4\.1.1 Deterministic tractography][episode08] | FIXME | +| | 30 | [4\.1 Local tractography][episode07] | What input data does a local tractography method require?
Which steps does a local tractography method follow? | +| | 30 | [4\.1.1 Deterministic tractography][episode08] | What computations does a deterministic tractography require?
How can we visualize the streamlines generated by a tractography method? | | | 30 | [4\.1.2 Probabilistic tractography][episode09] | Why do we need tractography algorithms beyond the deterministic ones?
How is probabilistic tractography different from deterministic tractography? | ## Contributing