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installation error : unusual frameshift mutation and can't be run through yn00. #13

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bioinfokushwaha opened this issue May 1, 2023 · 1 comment

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@bioinfokushwaha
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python Pangloss.py -h
File "Pangloss.py", line 334
print "{0}, {1} has unusual frameshift mutation and can't be run through yn00.".format(e, cluster)
^
SyntaxError: invalid syntax

@fungal-spore
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@bioinfokushwaha Pangloss is written in python2, check to see what you are using with

python --version

you can use something like conda or mamba to create an environment with python2

mamba create --name pangloss python=2.7

and install the needed biopython with

python2.7 -m pip install biopython==1.76

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