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cudatoolkit-11.8.0-h37601d7_11.conda extraction failed #86

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anjos opened this issue Jan 13, 2023 · 6 comments
Open
1 task done

cudatoolkit-11.8.0-h37601d7_11.conda extraction failed #86

anjos opened this issue Jan 13, 2023 · 6 comments
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bug Something isn't working

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@anjos
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anjos commented Jan 13, 2023

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

I cannot seem to be able to install this package on a Linux-64 box. The following command line:

mamba create -n sleep python=3.10 pytorch-gpu=1.13

Consistently results in:

critical libmamba Write failed
cudatoolkit-11.8.0-h37601d7_11.conda extraction failed
Found incorrect download: cudatoolkit. Aborting
...
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/remote/idiap.svm/user.active/aanjos/mamba/lib/python3.10/site-packages/conda/exceptions.py", line 1118, in __call__
        return func(*args, **kwargs)
      File "/remote/idiap.svm/user.active/aanjos/mamba/lib/python3.10/site-packages/mamba/mamba.py", line 936, in exception_converter
        raise e
      File "/remote/idiap.svm/user.active/aanjos/mamba/lib/python3.10/site-packages/mamba/mamba.py", line 929, in exception_converter
        exit_code = _wrapped_main(*args, **kwargs)
      File "/remote/idiap.svm/user.active/aanjos/mamba/lib/python3.10/site-packages/mamba/mamba.py", line 887, in _wrapped_main
        result = do_call(parsed_args, p)
      File "/remote/idiap.svm/user.active/aanjos/mamba/lib/python3.10/site-packages/mamba/mamba.py", line 754, in do_call
        exit_code = create(args, parser)
      File "/remote/idiap.svm/user.active/aanjos/mamba/lib/python3.10/site-packages/mamba/mamba.py", line 630, in create
        return install(args, parser, "create")
      File "/remote/idiap.svm/user.active/aanjos/mamba/lib/python3.10/site-packages/mamba/mamba.py", line 586, in install
        transaction.fetch_extract_packages()
    RuntimeError: Found incorrect download: cudatoolkit. Aborting

`$ /remote/idiap.svm/user.active/aanjos/mamba/bin/mamba create -n sleep python=3.10 pytorch-gpu=1.13`

  environment variables:
                 CIO_TEST=<not set>
        CONDA_DEFAULT_ENV=base
                CONDA_EXE=/remote/idiap.svm/user.active/aanjos/mamba/bin/conda
      CONDA_OVERRIDE_CUDA=11.6
             CONDA_PREFIX=/remote/idiap.svm/user.active/aanjos/mamba
    CONDA_PROMPT_MODIFIER=(base)
         CONDA_PYTHON_EXE=/remote/idiap.svm/user.active/aanjos/mamba/bin/python
               CONDA_ROOT=/remote/idiap.svm/user.active/aanjos/mamba
              CONDA_SHLVL=1
           CURL_CA_BUNDLE=<not set>
               LD_PRELOAD=<not set>
                     PATH=/remote/idiap.svm/user.active/aanjos/mamba/bin:/remote/idiap.svm/user.
                          active/aanjos/mamba/bin:/idiap/user/aanjos/mamba/envs/neovim/bin:/idia
                          p/home/aanjos/bin:/remote/idiap.svm/user.active/aanjos/mamba/condabin:
                          /usr/local/bin:/usr/bin:/bin:/usr/games:/idiap/resource/software/scrip
                          ts
            PYTHONSTARTUP=/idiap/home/aanjos/.python_profile.py
       REQUESTS_CA_BUNDLE=<not set>
             SETSHELLPATH=/idiap/resource/software/setshell/out-Debian
            SSL_CERT_FILE=<not set>

     active environment : base
    active env location : /remote/idiap.svm/user.active/aanjos/mamba
            shell level : 1
       user config file : /idiap/home/aanjos/.condarc
 populated config files : /remote/idiap.svm/user.active/aanjos/mamba/.condarc
                          /remote/idiap.svm/user.active/aanjos/mamba/condarc
          conda version : 22.11.1
    conda-build version : 3.23.3
         python version : 3.10.8.final.0
       virtual packages : __archspec=1=x86_64
                          __cuda=11.6=0
                          __glibc=2.31=0
                          __linux=5.10.0=0
                          __unix=0=0
       base environment : /remote/idiap.svm/user.active/aanjos/mamba  (writable)
      conda av data dir : /remote/idiap.svm/user.active/aanjos/mamba/etc/conda
  conda av metadata url : None
           channel URLs : https://www.idiap.ch/software/bob/conda/label/beta/linux-64
                          https://www.idiap.ch/software/bob/conda/label/beta/noarch
                          https://www.idiap.ch/software/bob/conda/linux-64
                          https://www.idiap.ch/software/bob/conda/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /remote/idiap.svm/user.active/aanjos/mamba/pkgs
                          /idiap/home/aanjos/.conda/pkgs
       envs directories : /remote/idiap.svm/user.active/aanjos/mamba/envs
                          /idiap/home/aanjos/.conda/envs
               platform : linux-64
             user-agent : conda/22.11.1 requests/2.28.1 CPython/3.10.8 Linux/5.10.0-20-amd64 debian/11 glibc/2.31
                UID:GID : 1386:500
             netrc file : None
           offline mode : False


An unexpected error has occurred. Conda has prepared the above report.

... this halts the environment creation process. I tried cleaning the cache, but with the same effect on each try.

Any suggestions?

Installed packages

Not pertinent.

Environment info

active environment : base
    active env location : /remote/idiap.svm/user.active/aanjos/mamba
            shell level : 1
       user config file : /idiap/home/aanjos/.condarc
 populated config files : /remote/idiap.svm/user.active/aanjos/mamba/.condarc
                          /remote/idiap.svm/user.active/aanjos/mamba/condarc
          conda version : 22.11.1
    conda-build version : 3.23.3
         python version : 3.10.8.final.0
       virtual packages : __archspec=1=x86_64
                          __glibc=2.31=0
                          __linux=5.10.0=0
                          __unix=0=0
       base environment : /remote/idiap.svm/user.active/aanjos/mamba  (writable)
      conda av data dir : /remote/idiap.svm/user.active/aanjos/mamba/etc/conda
  conda av metadata url : None
           channel URLs : https://www.idiap.ch/software/bob/conda/label/beta/linux-64
                          https://www.idiap.ch/software/bob/conda/label/beta/noarch
                          https://www.idiap.ch/software/bob/conda/linux-64
                          https://www.idiap.ch/software/bob/conda/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /remote/idiap.svm/user.active/aanjos/mamba/pkgs
                          /idiap/home/aanjos/.conda/pkgs
       envs directories : /remote/idiap.svm/user.active/aanjos/mamba/envs
                          /idiap/home/aanjos/.conda/envs
               platform : linux-64
             user-agent : conda/22.11.1 requests/2.28.1 CPython/3.10.8 Linux/5.10.0-20-amd64 debian/11 glibc/2.31
                UID:GID : 1386:500
             netrc file : None
           offline mode : False
@anjos anjos added the bug Something isn't working label Jan 13, 2023
@anjos
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anjos commented Jan 13, 2023

The same also happens with just mamba create -n fail cudatoolkit=11.7...

@jakirkham
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Please include conda list -n base

@anjos
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anjos commented Jan 17, 2023

Sure, here it is:

# packages in environment at /remote/idiap.svm/user.active/aanjos/mamba:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
alabaster                 0.7.12                     py_0    conda-forge
anyio                     3.6.2              pyhd8ed1ab_0    conda-forge
atk-1.0                   2.38.0               hd4edc92_1    conda-forge
attrs                     22.2.0             pyh71513ae_0    conda-forge
babel                     2.11.0             pyhd8ed1ab_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
black                     22.12.0         py310hff52083_0    conda-forge
bleach                    5.0.1              pyhd8ed1ab_0    conda-forge
boa                       0.14.0             pyhd8ed1ab_0    conda-forge
bob.devtools              5.4.1b0                py310_15    https://www.idiap.ch/software/bob/conda/label/beta
brotlipy                  0.7.0           py310h5764c6d_1005    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.12.7            ha878542_0    conda-forge
cairo                     1.16.0            ha61ee94_1014    conda-forge
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py310h255011f_3    conda-forge
cfgv                      3.3.1              pyhd8ed1ab_0    conda-forge
chardet                   5.1.0           py310hff52083_0    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
click                     8.1.3           unix_pyhd8ed1ab_2    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cmarkgfm                  0.8.0           py310h5764c6d_2    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
commonmark                0.9.1                      py_0    conda-forge
conda                     22.11.1         py310hff52083_1    conda-forge
conda-build               3.23.3          py310hff52083_0    conda-forge
conda-package-handling    2.0.2              pyh38be061_0    conda-forge
conda-package-streaming   0.7.0              pyhd8ed1ab_1    conda-forge
cryptography              39.0.0          py310h34c0648_0    conda-forge
curl                      7.87.0               hdc1c0ab_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
dbus                      1.13.6               h5008d03_3    conda-forge
distlib                   0.3.6              pyhd8ed1ab_0    conda-forge
docformatter              1.5.1              pyhd8ed1ab_0    conda-forge
docutils                  0.19            py310hff52083_1    conda-forge
expat                     2.5.0                h27087fc_0    conda-forge
filelock                  3.9.0              pyhd8ed1ab_0    conda-forge
fmt                       9.1.0                h924138e_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.1               hc2a2eb6_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.12.1               hca18f0e_1    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
future                    0.18.3             pyhd8ed1ab_0    conda-forge
gdk-pixbuf                2.42.10              h05c8ddd_0    conda-forge
gettext                   0.21.1               h27087fc_0    conda-forge
giflib                    5.2.1                h36c2ea0_2    conda-forge
git                       2.39.0          pl5321h693f4a3_0    conda-forge
gitdb                     4.0.10             pyhd8ed1ab_0    conda-forge
gitpython                 3.1.30             pyhd8ed1ab_0    conda-forge
glob2                     0.7                        py_0    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
graphviz                  7.0.6                h2e5815a_0    conda-forge
gtk2                      2.24.33              h90689f9_2    conda-forge
gts                       0.7.6                h64030ff_2    conda-forge
harfbuzz                  6.0.0                h8e241bc_0    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
identify                  2.5.13             pyhd8ed1ab_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
imagesize                 1.4.1              pyhd8ed1ab_0    conda-forge
importlib-metadata        6.0.0              pyha770c72_0    conda-forge
importlib_metadata        6.0.0                hd8ed1ab_0    conda-forge
importlib_resources       5.10.2             pyhd8ed1ab_0    conda-forge
jaraco.classes            3.2.3              pyhd8ed1ab_0    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jeepney                   0.8.0              pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
joblib                    1.2.0              pyhd8ed1ab_0    conda-forge
jpeg                      9e                   h166bdaf_2    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsonschema                4.17.3             pyhd8ed1ab_0    conda-forge
keyring                   23.13.1         py310hff52083_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.20.1               h81ceb04_0    conda-forge
ld_impl_linux-64          2.39                 hcc3a1bd_1    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libarchive                3.6.2                h3d51595_0    conda-forge
libcurl                   7.87.0               hdc1c0ab_0    conda-forge
libdeflate                1.14                 h166bdaf_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 12.2.0              h65d4601_19    conda-forge
libgd                     2.3.3                h5aea950_4    conda-forge
libglib                   2.74.1               h606061b_1    conda-forge
libgomp                   12.2.0              h65d4601_19    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
liblief                   0.12.3               h27087fc_0    conda-forge
libmamba                  1.1.0                hde2b089_3    conda-forge
libmambapy                1.1.0           py310h1428755_3    conda-forge
libnghttp2                1.51.0               hff17c54_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libpng                    1.6.39               h753d276_0    conda-forge
librsvg                   2.54.4               h7abd40a_0    conda-forge
libsolv                   0.7.23               h3eb15da_0    conda-forge
libsqlite                 3.40.0               h753d276_0    conda-forge
libssh2                   1.10.0               hf14f497_3    conda-forge
libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
libtiff                   4.5.0                h82bc61c_0    conda-forge
libtool                   2.4.7                h27087fc_0    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libwebp                   1.2.4                h1daa5a0_1    conda-forge
libwebp-base              1.2.4                h166bdaf_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxml2                   2.10.3               h7463322_0    conda-forge
libxslt                   1.1.37               h873f0b0_0    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
lxml                      4.9.1           py310h5764c6d_0    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
mamba                     1.1.0           py310h51d5547_3    conda-forge
markupsafe                2.1.1           py310h5764c6d_2    conda-forge
more-itertools            9.0.0              pyhd8ed1ab_0    conda-forge
mypy_extensions           0.4.3           py310hff52083_6    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
nodeenv                   1.7.0              pyhd8ed1ab_0    conda-forge
openssl                   3.0.7                h0b41bf4_1    conda-forge
packaging                 23.0               pyhd8ed1ab_0    conda-forge
pango                     1.50.12              hd33c08f_1    conda-forge
patch                     2.7.6             h7f98852_1002    conda-forge
patchelf                  0.17.2               h58526e2_0    conda-forge
pathspec                  0.10.3             pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pcre2                     10.40                hc3806b6_0    conda-forge
perl                      5.32.1          2_h7f98852_perl5    conda-forge
pip                       22.3.1             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
pkginfo                   1.9.6              pyhd8ed1ab_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_0    conda-forge
platformdirs              2.6.2              pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0              pyhd8ed1ab_5    conda-forge
pre-commit                2.21.0          py310hff52083_0    conda-forge
prompt-toolkit            3.0.36             pyha770c72_0    conda-forge
prompt_toolkit            3.0.36               hd8ed1ab_0    conda-forge
psutil                    5.9.4           py310h5764c6d_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
py-lief                   0.12.3          py310hd8f1fbe_0    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycosat                   0.6.4           py310h5764c6d_1    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.14.0             pyhd8ed1ab_0    conda-forge
pyopenssl                 23.0.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyrsistent                0.19.3          py310h1fa729e_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.10.8          h4a9ceb5_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-gitlab             3.12.0             pyhd8ed1ab_0    conda-forge
python-graphviz           0.20.1             pyh22cad53_0    conda-forge
python-libarchive-c       4.0             py310hff52083_2    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pytz                      2022.7             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h5764c6d_5    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
readme_renderer           37.3               pyhd8ed1ab_0    conda-forge
reproc                    14.2.4               h0b41bf4_0    conda-forge
reproc-cpp                14.2.4               hcb278e6_0    conda-forge
requests                  2.28.1             pyhd8ed1ab_1    conda-forge
requests-toolbelt         0.10.1             pyhd8ed1ab_0    conda-forge
rfc3986                   2.0.0              pyhd8ed1ab_0    conda-forge
rich                      13.0.1             pyhd8ed1ab_0    conda-forge
ripgrep                   13.0.0               h2f28480_2    conda-forge
ruamel.yaml               0.17.21         py310h5764c6d_2    conda-forge
ruamel.yaml.clib          0.2.7           py310h1fa729e_1    conda-forge
ruamel_yaml               0.15.80         py310h5764c6d_1008    conda-forge
secretstorage             3.3.3           py310hff52083_1    conda-forge
setuptools                65.6.3             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
smmap                     3.0.5              pyh44b312d_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sphinx                    6.1.3              pyhd8ed1ab_0    conda-forge
sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    2.0.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_2    conda-forge
sqlite                    3.40.0               h4ff8645_0    conda-forge
tabulate                  0.9.0              pyhd8ed1ab_1    conda-forge
termcolor                 2.2.0              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tqdm                      4.64.1             pyhd8ed1ab_0    conda-forge
twine                     4.0.2              pyhd8ed1ab_0    conda-forge
typed-ast                 1.5.4           py310h5764c6d_1    conda-forge
typing-extensions         4.4.0                hd8ed1ab_0    conda-forge
typing_extensions         4.4.0              pyha770c72_0    conda-forge
tzdata                    2022g                h191b570_0    conda-forge
ukkonen                   1.0.1           py310hbf28c38_3    conda-forge
untokenize                0.1.1                      py_0    conda-forge
urllib3                   1.26.14            pyhd8ed1ab_0    conda-forge
virtualenv                20.17.1         py310hff52083_0    conda-forge
watchgod                  0.8.2              pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webdavclient3             3.14.5             pyhd8ed1ab_1    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.38.4             pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.7.0                h27087fc_2    conda-forge
zipp                      3.11.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h166bdaf_4    conda-forge
zstandard                 0.19.0          py310hdeb6495_1    conda-forge
zstd                      1.5.2                h6239696_4    conda-forge

@jakirkham
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This is really a lot of packages to have in an environment (especially base). Generally the recommendation is to keep the bare minimum in base (like conda and its dependencies, but not much else). It would be preferable to have a minimal reproducer.

Could you please try installing a fresh copy of Conda (like using Miniconda or Miniforge) and try installing cudatoolkit in a fresh environment using that new Conda install?

@anjos
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anjos commented Jan 17, 2023

OK! Thanks for trying to help me.

I installed a new version of Mambaforge, then updated it with mamba update -n base --all. Then, I tried the command-line above, and it still fails on the same spot:

$ conda list -n base
# packages in environment at .../aanjos/mamba2:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
brotlipy                  0.7.0           py310h5764c6d_1005    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.12.7            ha878542_0    conda-forge
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py310h255011f_3    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
conda                     22.11.1         py310hff52083_1    conda-forge
conda-package-handling    2.0.2              pyh38be061_0    conda-forge
conda-package-streaming   0.7.0              pyhd8ed1ab_1    conda-forge
cryptography              39.0.0          py310h34c0648_0    conda-forge
fmt                       9.1.0                h924138e_0    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.20.1               h81ceb04_0    conda-forge
ld_impl_linux-64          2.39                 hcc3a1bd_1    conda-forge
libarchive                3.6.2                h3d51595_0    conda-forge
libcurl                   7.87.0               hdc1c0ab_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 12.2.0              h65d4601_19    conda-forge
libgomp                   12.2.0              h65d4601_19    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
libmamba                  1.1.0                hde2b089_3    conda-forge
libmambapy                1.1.0           py310h1428755_3    conda-forge
libnghttp2                1.51.0               hff17c54_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libsolv                   0.7.23               h3eb15da_0    conda-forge
libsqlite                 3.40.0               h753d276_0    conda-forge
libssh2                   1.10.0               hf14f497_3    conda-forge
libstdcxx-ng              12.2.0              h46fd767_19    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libxml2                   2.10.3               h7463322_0    conda-forge
libzlib                   1.2.13               h166bdaf_4    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
mamba                     1.1.0           py310h51d5547_3    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
openssl                   3.0.7                h0b41bf4_1    conda-forge
pip                       22.3.1             pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0              pyhd8ed1ab_5    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycosat                   0.6.4           py310h5764c6d_1    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pyopenssl                 23.0.0             pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.10.8          h4a9ceb5_0_cpython    conda-forge
python_abi                3.10                    3_cp310    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
reproc                    14.2.4               h0b41bf4_0    conda-forge
reproc-cpp                14.2.4               hcb278e6_0    conda-forge
requests                  2.28.2             pyhd8ed1ab_0    conda-forge
ruamel.yaml               0.17.21         py310h5764c6d_2    conda-forge
ruamel.yaml.clib          0.2.7           py310h1fa729e_1    conda-forge
ruamel_yaml               0.15.80         py310h5764c6d_1008    conda-forge
setuptools                66.0.0             pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tqdm                      4.64.1             pyhd8ed1ab_0    conda-forge
tzdata                    2022g                h191b570_0    conda-forge
urllib3                   1.26.14            pyhd8ed1ab_0    conda-forge
wheel                     0.38.4             pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.7.0                h27087fc_2    conda-forge
zstandard                 0.19.0          py310hdeb6495_1    conda-forge
zstd                      1.5.2                h6239696_4    conda-forge

Here are the log outputs of CONDA_OVERRIDE_CUDA=11.8 mamba create -n fail python=3.10 pytorch-gpu=1.13 (if I don't write the OVERRIDE thingy, it doesn't find __cuda):


                  __    __    __    __
                 /  \  /  \  /  \  /  \
                /    \/    \/    \/    \
███████████████/  /██/  /██/  /██/  /████████████████████████
              /  / \   / \   / \   / \  \____
             /  /   \_/   \_/   \_/   \    o \__,
            / _/                       \_____/  `
            |/
        ███╗   ███╗ █████╗ ███╗   ███╗██████╗  █████╗
        ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗
        ██╔████╔██║███████║██╔████╔██║██████╔╝███████║
        ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║
        ██║ ╚═╝ ██║██║  ██║██║ ╚═╝ ██║██████╔╝██║  ██║
        ╚═╝     ╚═╝╚═╝  ╚═╝╚═╝     ╚═╝╚═════╝ ╚═╝  ╚═╝

        mamba (1.1.0) supported by @QuantStack

        GitHub:  https://github.com/mamba-org/mamba
        Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████


Looking for: ['python=3.10', 'pytorch-gpu=1.13']

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache
Transaction

  Prefix: /remote/idiap.svm/temp.biosignal01/aanjos/mamba2/envs/fail

  Updating specs:

   - python=3.10
   - pytorch-gpu=1.13


  Package                Version  Build                     Channel                    Size
─────────────────────────────────────────────────────────────────────────────────────────────
  Install:
─────────────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex            0.1  conda_forge               conda-forge/linux-64     Cached
  + _openmp_mutex            4.5  2_kmp_llvm                conda-forge/linux-64        6kB
  + bzip2                  1.0.8  h7f98852_4                conda-forge/linux-64     Cached
  + ca-certificates    2022.12.7  ha878542_0                conda-forge/linux-64     Cached
  + cffi                  1.15.1  py310h255011f_3           conda-forge/linux-64     Cached
  + cudatoolkit           11.8.0  h37601d7_11               conda-forge/linux-64      667MB
  + cudnn               8.4.1.50  hed8a83a_0                conda-forge/linux-64      648MB
  + icu                     70.1  h27087fc_0                conda-forge/linux-64     Cached
  + ld_impl_linux-64        2.39  hcc3a1bd_1                conda-forge/linux-64     Cached
  + libblas                3.9.0  16_linux64_openblas       conda-forge/linux-64       13kB
  + libcblas               3.9.0  16_linux64_openblas       conda-forge/linux-64       13kB
  + libffi                 3.4.2  h7f98852_5                conda-forge/linux-64     Cached
  + libgcc-ng             12.2.0  h65d4601_19               conda-forge/linux-64     Cached
  + libgfortran-ng        12.2.0  h69a702a_19               conda-forge/linux-64       23kB
  + libgfortran5          12.2.0  h337968e_19               conda-forge/linux-64        2MB
  + libhwloc               2.8.0  h32351e8_1                conda-forge/linux-64        3MB
  + libiconv                1.17  h166bdaf_0                conda-forge/linux-64     Cached
  + liblapack              3.9.0  16_linux64_openblas       conda-forge/linux-64       13kB
  + libnsl                 2.0.0  h7f98852_0                conda-forge/linux-64     Cached
  + libopenblas           0.3.21  pthreads_h78a6416_3       conda-forge/linux-64       11MB
  + libprotobuf          3.21.12  h3eb15da_0                conda-forge/linux-64        2MB
  + libsqlite             3.40.0  h753d276_0                conda-forge/linux-64     Cached
  + libstdcxx-ng          12.2.0  h46fd767_19               conda-forge/linux-64     Cached
  + libuuid               2.32.1  h7f98852_1000             conda-forge/linux-64     Cached
  + libxml2               2.10.3  h7463322_0                conda-forge/linux-64     Cached
  + libzlib               1.2.13  h166bdaf_4                conda-forge/linux-64     Cached
  + llvm-openmp           15.0.7  h0cdce71_0                conda-forge/linux-64        3MB
  + magma                  2.6.2  hc72dce7_0                conda-forge/linux-64      243MB
  + mkl                 2022.2.1  h84fe81f_16997            conda-forge/linux-64      165MB
  + nccl                2.14.3.1  h0800d71_0                conda-forge/linux-64      152MB
  + ncurses                  6.3  h27087fc_1                conda-forge/linux-64     Cached
  + ninja                 1.11.0  h924138e_0                conda-forge/linux-64        3MB
  + numpy                 1.24.1  py310h08bbf29_0           conda-forge/linux-64        7MB
  + openssl                3.0.7  h0b41bf4_1                conda-forge/linux-64     Cached
  + pip                   22.3.1  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + pycparser               2.21  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + python                3.10.8  h4a9ceb5_0_cpython        conda-forge/linux-64     Cached
  + python_abi              3.10  3_cp310                   conda-forge/linux-64     Cached
  + pytorch               1.13.1  cuda112py310he33e0d6_200  conda-forge/linux-64      380MB
  + pytorch-gpu           1.13.1  cuda112py310h7c68dbd_200  conda-forge/linux-64       18kB
  + readline               8.1.2  h0f457ee_0                conda-forge/linux-64     Cached
  + setuptools            66.0.0  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + sleef                  3.5.1  h9b69904_2                conda-forge/linux-64        2MB
  + tbb                 2021.7.0  h924138e_1                conda-forge/linux-64        2MB
  + tk                    8.6.12  h27826a3_0                conda-forge/linux-64     Cached
  + typing_extensions      4.4.0  pyha770c72_0              conda-forge/noarch         30kB
  + tzdata                 2022g  h191b570_0                conda-forge/noarch       Cached
  + wheel                 0.38.4  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + xz                     5.2.6  h166bdaf_0                conda-forge/linux-64     Cached

  Summary:

  Install: 49 packages

  Total download: 2GB

─────────────────────────────────────────────────────────────────────────────────────────────


Dry run. Exiting.

DryRunExit: Dry run. Exiting.

╭─[10:27] aanjos@vws023 /idiap/temp/aanjos ❮base❯
╰─➤ CONDA_OVERRIDE_CUDA=11.6 mamba create -n fail python=3.10 pytorch-gpu=1.13

                  __    __    __    __
                 /  \  /  \  /  \  /  \
                /    \/    \/    \/    \
███████████████/  /██/  /██/  /██/  /████████████████████████
              /  / \   / \   / \   / \  \____
             /  /   \_/   \_/   \_/   \    o \__,
            / _/                       \_____/  `
            |/
        ███╗   ███╗ █████╗ ███╗   ███╗██████╗  █████╗
        ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗
        ██╔████╔██║███████║██╔████╔██║██████╔╝███████║
        ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║
        ██║ ╚═╝ ██║██║  ██║██║ ╚═╝ ██║██████╔╝██║  ██║
        ╚═╝     ╚═╝╚═╝  ╚═╝╚═╝     ╚═╝╚═════╝ ╚═╝  ╚═╝

        mamba (1.1.0) supported by @QuantStack

        GitHub:  https://github.com/mamba-org/mamba
        Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████


Looking for: ['python=3.10', 'pytorch-gpu=1.13']

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache
Transaction

  Prefix: /remote/idiap.svm/temp.biosignal01/aanjos/mamba2/envs/fail

  Updating specs:

   - python=3.10
   - pytorch-gpu=1.13


  Package                Version  Build                     Channel                    Size
─────────────────────────────────────────────────────────────────────────────────────────────
  Install:
─────────────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex            0.1  conda_forge               conda-forge/linux-64     Cached
  + _openmp_mutex            4.5  2_kmp_llvm                conda-forge/linux-64        6kB
  + bzip2                  1.0.8  h7f98852_4                conda-forge/linux-64     Cached
  + ca-certificates    2022.12.7  ha878542_0                conda-forge/linux-64     Cached
  + cffi                  1.15.1  py310h255011f_3           conda-forge/linux-64     Cached
  + cudatoolkit           11.8.0  h37601d7_11               conda-forge/linux-64      667MB
  + cudnn               8.4.1.50  hed8a83a_0                conda-forge/linux-64      648MB
  + icu                     70.1  h27087fc_0                conda-forge/linux-64     Cached
  + ld_impl_linux-64        2.39  hcc3a1bd_1                conda-forge/linux-64     Cached
  + libblas                3.9.0  16_linux64_openblas       conda-forge/linux-64       13kB
  + libcblas               3.9.0  16_linux64_openblas       conda-forge/linux-64       13kB
  + libffi                 3.4.2  h7f98852_5                conda-forge/linux-64     Cached
  + libgcc-ng             12.2.0  h65d4601_19               conda-forge/linux-64     Cached
  + libgfortran-ng        12.2.0  h69a702a_19               conda-forge/linux-64       23kB
  + libgfortran5          12.2.0  h337968e_19               conda-forge/linux-64        2MB
  + libhwloc               2.8.0  h32351e8_1                conda-forge/linux-64        3MB
  + libiconv                1.17  h166bdaf_0                conda-forge/linux-64     Cached
  + liblapack              3.9.0  16_linux64_openblas       conda-forge/linux-64       13kB
  + libnsl                 2.0.0  h7f98852_0                conda-forge/linux-64     Cached
  + libopenblas           0.3.21  pthreads_h78a6416_3       conda-forge/linux-64       11MB
  + libprotobuf          3.21.12  h3eb15da_0                conda-forge/linux-64        2MB
  + libsqlite             3.40.0  h753d276_0                conda-forge/linux-64     Cached
  + libstdcxx-ng          12.2.0  h46fd767_19               conda-forge/linux-64     Cached
  + libuuid               2.32.1  h7f98852_1000             conda-forge/linux-64     Cached
  + libxml2               2.10.3  h7463322_0                conda-forge/linux-64     Cached
  + libzlib               1.2.13  h166bdaf_4                conda-forge/linux-64     Cached
  + llvm-openmp           15.0.7  h0cdce71_0                conda-forge/linux-64        3MB
  + magma                  2.6.2  hc72dce7_0                conda-forge/linux-64      243MB
  + mkl                 2022.2.1  h84fe81f_16997            conda-forge/linux-64      165MB
  + nccl                2.14.3.1  h0800d71_0                conda-forge/linux-64      152MB
  + ncurses                  6.3  h27087fc_1                conda-forge/linux-64     Cached
  + ninja                 1.11.0  h924138e_0                conda-forge/linux-64        3MB
  + numpy                 1.24.1  py310h08bbf29_0           conda-forge/linux-64        7MB
  + openssl                3.0.7  h0b41bf4_1                conda-forge/linux-64     Cached
  + pip                   22.3.1  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + pycparser               2.21  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + python                3.10.8  h4a9ceb5_0_cpython        conda-forge/linux-64     Cached
  + python_abi              3.10  3_cp310                   conda-forge/linux-64     Cached
  + pytorch               1.13.1  cuda112py310he33e0d6_200  conda-forge/linux-64      380MB
  + pytorch-gpu           1.13.1  cuda112py310h7c68dbd_200  conda-forge/linux-64       18kB
  + readline               8.1.2  h0f457ee_0                conda-forge/linux-64     Cached
  + setuptools            66.0.0  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + sleef                  3.5.1  h9b69904_2                conda-forge/linux-64        2MB
  + tbb                 2021.7.0  h924138e_1                conda-forge/linux-64        2MB
  + tk                    8.6.12  h27826a3_0                conda-forge/linux-64     Cached
  + typing_extensions      4.4.0  pyha770c72_0              conda-forge/noarch         30kB
  + tzdata                 2022g  h191b570_0                conda-forge/noarch       Cached
  + wheel                 0.38.4  pyhd8ed1ab_0              conda-forge/noarch       Cached
  + xz                     5.2.6  h166bdaf_0                conda-forge/linux-64     Cached

  Summary:

  Install: 49 packages

  Total download: 2GB

─────────────────────────────────────────────────────────────────────────────────────────────


Confirm changes: [Y/n]
_openmp_mutex                                        5.7kB @  31.9kB/s  0.2s
libgfortran-ng                                      22.9kB @ 115.2kB/s  0.2s
sleef                                                1.6MB @   7.4MB/s  0.2s
llvm-openmp                                          3.3MB @  14.7MB/s  0.2s
tbb                                                  1.6MB @   6.0MB/s  0.1s
libgfortran5                                         1.8MB @   6.9MB/s  0.3s
typing_extensions                                   30.0kB @ 105.2kB/s  0.1s
liblapack                                           12.8kB @  39.6kB/s  0.1s
ninja                                                2.9MB @   8.4MB/s  0.1s
pytorch-gpu                                         18.4kB @  43.4kB/s  0.1s
libhwloc                                             3.1MB @   5.2MB/s  0.3s
nccl                                               152.2MB @  31.7MB/s  4.5s
libprotobuf                                          2.2MB @ 407.9kB/s  0.6s
libcblas                                            12.8kB @   2.3kB/s  0.1s
libopenblas                                         10.6MB @   1.8MB/s  0.6s
mkl                                                164.9MB @  23.1MB/s  6.8s
libblas                                             12.9kB @   1.6kB/s  0.8s
numpy                                                6.6MB @ 756.9kB/s  0.8s
magma                                              242.8MB @  24.3MB/s  9.4s
cudatoolkit                                        666.8MB @  33.5MB/s 19.8s
pytorch                                            379.9MB @  17.4MB/s 15.9s
cudnn                                              648.4MB @  29.2MB/s 22.1s
[+] 27.4s
Downloading      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━   2.3GB /   2.3GB                           22.3s
[+] 27.5s
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cudatoolkit-11.8.0-h37601d7_11.conda extraction failed
Found incorrect download: cudatoolkit. Aborting

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/lib/python3.10/site-packages/conda/exceptions.py", line 1118, in __call__
        return func(*args, **kwargs)
      File "/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/lib/python3.10/site-packages/mamba/mamba.py", line 936, in exception_converter
        raise e
      File "/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/lib/python3.10/site-packages/mamba/mamba.py", line 929, in exception_converter
        exit_code = _wrapped_main(*args, **kwargs)
      File "/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/lib/python3.10/site-packages/mamba/mamba.py", line 887, in _wrapped_main
        result = do_call(parsed_args, p)
      File "/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/lib/python3.10/site-packages/mamba/mamba.py", line 754, in do_call
        exit_code = create(args, parser)
      File "/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/lib/python3.10/site-packages/mamba/mamba.py", line 630, in create
        return install(args, parser, "create")
      File "/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/lib/python3.10/site-packages/mamba/mamba.py", line 586, in install
        transaction.fetch_extract_packages()
    RuntimeError: Found incorrect download: cudatoolkit. Aborting

`$ /remote/idiap.svm/temp.biosignal01/aanjos/mamba2/bin/mamba create -n fail python=3.10 pytorch-gpu=1.13`

  environment variables:
                 CIO_TEST=<not set>
        CONDA_DEFAULT_ENV=base
                CONDA_EXE=/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/bin/conda
      CONDA_OVERRIDE_CUDA=11.6
             CONDA_PREFIX=/remote/idiap.svm/temp.biosignal01/aanjos/mamba2
    CONDA_PROMPT_MODIFIER=(base)
         CONDA_PYTHON_EXE=/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/bin/python
               CONDA_ROOT=/remote/idiap.svm/temp.biosignal01/aanjos/mamba2
              CONDA_SHLVL=1
           CURL_CA_BUNDLE=<not set>
               LD_PRELOAD=<not set>
                     PATH=/remote/idiap.svm/temp.biosignal01/aanjos/mamba2/bin:/idiap/user/aanjo
                          s/mamba/envs/neovim/bin:/idiap/home/aanjos/bin:/remote/idiap.svm/user.
                          active/aanjos/mamba/condabin:/usr/local/bin:/usr/bin:/bin:/usr/games:/
                          idiap/resource/software/scripts
            PYTHONSTARTUP=/idiap/home/aanjos/.python_profile.py
       REQUESTS_CA_BUNDLE=<not set>
             SETSHELLPATH=/idiap/resource/software/setshell/out-Debian
            SSL_CERT_FILE=<not set>

     active environment : base
    active env location : /remote/idiap.svm/temp.biosignal01/aanjos/mamba2
            shell level : 1
       user config file : /idiap/home/aanjos/.condarc
 populated config files : /remote/idiap.svm/temp.biosignal01/aanjos/mamba2/.condarc
          conda version : 22.11.1
    conda-build version : not installed
         python version : 3.10.8.final.0
       virtual packages : __archspec=1=x86_64
                          __cuda=11.6=0
                          __glibc=2.31=0
                          __linux=5.10.0=0
                          __unix=0=0
       base environment : /remote/idiap.svm/temp.biosignal01/aanjos/mamba2  (writable)
      conda av data dir : /remote/idiap.svm/temp.biosignal01/aanjos/mamba2/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /remote/idiap.svm/temp.biosignal01/aanjos/mamba2/pkgs
                          /idiap/home/aanjos/.conda/pkgs
       envs directories : /remote/idiap.svm/temp.biosignal01/aanjos/mamba2/envs
                          /idiap/home/aanjos/.conda/envs
               platform : linux-64
             user-agent : conda/22.11.1 requests/2.28.2 CPython/3.10.8 Linux/5.10.0-20-amd64 debian/11 glibc/2.31
                UID:GID : 1386:500
             netrc file : None
           offline mode : False


An unexpected error has occurred. Conda has prepared the above report.

@anjos
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anjos commented Jan 17, 2023

Hummm. Here are some some findings:

  • mamba create -n fail cudatoolkit=11.8 fails with the error above
  • conda create -n fail cudatoolkit=11.8 succeeds!

Why would that be?

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