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wrong folder: DIR_REPO #36

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ptrebert opened this issue Mar 1, 2023 · 0 comments
Open

wrong folder: DIR_REPO #36

ptrebert opened this issue Mar 1, 2023 · 0 comments

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@ptrebert
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ptrebert commented Mar 1, 2023

Although git will work its way up, the repository location is available in the variable DIR_REPO in the settings module and should thus be used here:

template-snakemake/workflow/rules/commons/40_pyutils.smk

Line 481 in fc73b1f

out = subprocess.check_output(call, shell=True, cwd=DIR_SNAKEFILE)

template-snakemake/workflow/rules/commons/30_settings.smk

Lines 111 to 112 in fc73b1f

DIR_REPOSITORY = DIR_SNAKEFILE.parent
DIR_REPO = DIR_REPOSITORY

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