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custom dabasebase build #140

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nayeon1994 opened this issue Jul 5, 2024 · 1 comment

nayeon1994 commented Jul 5, 2024 •

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I tried to build a custom database according to the manual.

However, I encountered an error with the following command:

midas2 build_midasdb --generate_cluster_info --species all --midasdb_name newdb --midasdb_dir tests_mags --debug --force -t 20

it said,
midas2: error: unrecognized arguments: --generate_cluster_info

my version is Metagenomic Intra-Species Diversity Analysis System 2 (MIDAS2), Version 2.0.0.rc3

How can I solve this?

Contributor

zhaoc1 commented Jul 5, 2024

Hi,

I haven’t got time to update the readme for MIDAS v3 yet. Please refer to the tests/test_db.sh for building custom MIDAS db. Thanks.

Chunyu

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