NAMESPACE

# Generated by roxygen2: do not edit by hand

export(cnvCallCN)
export(cnvCheckCor)
export(cnvCountsToMatrix)
export(cnvGatherCounts)
export(cnvGetCounts)
export(cnvReadBam)
export(cnvSimCounts)
export(cnvSimInterval)
export(cnvSimPool)
export(cnvValidCalls)
export(cnvValidCounts)
export(cnvValidInterval)
import(data.table)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(IRanges,IRanges)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(Rfast,rowMaxs)
importFrom(Rsamtools,"bamTag<-")
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(Rsamtools,scanBamHeader)
importFrom(matrixStats,rowLogSumExps)
importFrom(parallel,mclapply)
importFrom(stats,cor)
importFrom(stats,dnbinom)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,rbinom)
importFrom(stats,rlnorm)
importFrom(stats,runif)
importFrom(utils,file_test)