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LOG.md

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Version Updates

v1.1.0

  • Conversion to YAML format for portal objects
  • Added sanitize_vcf script to clean vcf files
  • Added BCFtools merge to merge multiple vcf files
  • Added conversion from bam to fastq
  • Added GATK LiftoverVcf

v1.0.0

  • v27 -> v1.0.0, we are starting a new more comprehensive versioning system
  • Added some change in metaworkflows to accomodate the changes in foursight
  • Re-organized and updated docker components

v27

  • This repo starts from the v26 release of cgap-pipeline and contains basic utilities steps and the steps to manipulate formats
  • Changes in repo structure to allow for compatibility with new pipeline organization