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How to pass protein sequence as array of strings #2
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Hi,
You need to first convert the sequences to the .lf format. It is a very
simple FASTA-like format. You can see examples here:
https://github.com/ddofer/asap/tree/master/data/phosphoserine
Also, I recommend you to look at our tutorial at:
https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial
Good luck!
Nadav
…On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer ***@***.***> wrote:
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Did some googling the format is rare. I can't find any service that
convert . Csv to lf
…On Thu, Aug 9, 2018, 2:41 PM nadavbra ***@***.***> wrote:
Hi,
You need to first convert the sequences to the .lf format. It is a very
simple FASTA-like format. You can see examples here:
https://github.com/ddofer/asap/tree/master/data/phosphoserine
Also, I recommend you to look at our tutorial at:
https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial
Good luck!
Nadav
On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer ***@***.***> wrote:
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There is no automatic tool that does this conversion; you will have to
write some code to do that. Fortunately, the format is super simple.
…On Thu, Aug 9, 2018 at 6:42 PM Zedonboy ***@***.***> wrote:
Did some googling the format is rare. I can't find any service that
convert . Csv to lf
On Thu, Aug 9, 2018, 2:41 PM nadavbra ***@***.***> wrote:
> Hi,
>
> You need to first convert the sequences to the .lf format. It is a very
> simple FASTA-like format. You can see examples here:
> https://github.com/ddofer/asap/tree/master/data/phosphoserine
>
> Also, I recommend you to look at our tutorial at:
> https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial
>
> Good luck!
>
> Nadav
>
> On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer ***@***.***>
wrote:
>
> > Assigned #2 <#2> to @nadavbra
> > <https://github.com/nadavbra>.
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I have sequences in .csv file, how do i pass it to asap
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