diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index b983289..c93e2a3 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -41,6 +41,19 @@ jobs: LATEST_TAG: ${{ matrix.proc }}-latest steps: + - name: Remove unwanted software + run: | + echo "Available storage before:" + sudo df -h + echo + sudo rm -rf /usr/share/dotnet + sudo rm -rf /usr/local/lib/android + sudo rm -rf /opt/ghc + sudo rm -rf /opt/hostedtoolcache/CodeQL + echo "Available storage after:" + sudo df -h + echo + - uses: actions/checkout@v4 - name: Build Image @@ -56,7 +69,9 @@ jobs: - name: Tests packages in container run: | - docker run $LOGIN_SERVER/$IMAGE:$SHA_TAG python -m pytest tests + docker run --network none \ + $LOGIN_SERVER/$IMAGE:$SHA_TAG \ + /code_execution/.pixi/envs/${{ matrix.proc }}/bin/python -m pytest tests - name: Log into Azure if: ${{ fromJson(env.SHOULD_PUBLISH) }} @@ -78,4 +93,3 @@ jobs: if: ${{ fromJson(env.SHOULD_PUBLISH) }} run: | docker push $LOGIN_SERVER/$IMAGE --all-tags - diff --git a/Makefile b/Makefile index a73bb2e..e7d3fdc 100644 --- a/Makefile +++ b/Makefile @@ -8,6 +8,8 @@ else CPU_OR_GPU ?= gpu endif +BLOCK_INTERNET ?= true + TAG := ${CPU_OR_GPU}-latest LOCAL_TAG := ${CPU_OR_GPU}-local @@ -109,7 +111,7 @@ endif ################################################################################# # Commands for building the container if you are changing the requirements # ################################################################################# -.PHONY: build clean interact-container pack-example pack-submission pull test-container test-submission update-lockfiles +.PHONY: build clean interact-container pack-example pack-submission pull test-container test-submission update-lockfile ## Builds the container locally build: @@ -117,53 +119,47 @@ build: --build-arg CPU_OR_GPU=${CPU_OR_GPU} \ --tag ${LOCAL_IMAGE}:${LOCAL_TAG} +runtime/pixi.lock: +ifeq (,$(wildcard ./runtime/pixi.lock)) + @echo Generating runtime/pixi.lock from scratch + @echo "version: 5" > runtime/pixi.lock + @echo "environments:" >> runtime/pixi.lock + @echo "packages:" >> runtime/pixi.lock +else + @echo Updating existing runtime/pixi.lock +endif + +## Updates runtime environment lockfile using Docker +update-lockfile: runtime/pixi.lock + @echo Building Docker image to generate lockfile + docker build runtime \ + --file runtime/Dockerfile-lock \ + --tag pixi-lock:local + @echo Running lock container + docker run \ + --mount type=bind,source="$(shell pwd)"/runtime/pixi.toml,target=/tmp/pixi.toml \ + --mount type=bind,source="$(shell pwd)"/runtime/pixi.lock,target=/tmp/pixi.lock \ + --rm \ + pixi-lock:local -runtime/conda-lock-cpu.yml: runtime/environment-cpu.yml - @echo Locking the CPU environment - conda-lock \ - --mamba \ - -p linux-64 \ - --without-cuda \ - -f runtime/environment-cpu.yml \ - --lockfile runtime/conda-lock-cpu.yml - conda-lock render \ - -p linux-64 \ - --filename-template runtime/environment-cpu.lock \ - runtime/conda-lock-cpu.yml - -runtime/conda-lock-gpu.yml: runtime/environment-gpu.yml - @echo Locking the GPU environment - conda-lock \ - --mamba \ - -p linux-64 \ - --with-cuda 11.8 \ - -f runtime/environment-gpu.yml \ - --lockfile runtime/conda-lock-gpu.yml - conda-lock render \ - -p linux-64 \ - --filename-template runtime/environment-gpu.lock \ - runtime/conda-lock-gpu.yml - -## Updates runtime environment lockfiles -update-lockfiles: runtime/conda-lock-cpu.yml runtime/conda-lock-gpu.yml - @python runtime/tests/test_lockfile.py runtime/conda-lock-cpu.yml - @python runtime/tests/test_lockfile.py runtime/conda-lock-gpu.yml ## Ensures that your locally built image can import all the Python packages successfully when it runs test-container: _check_image _echo_image _submission_write_perms docker run \ ${GPU_ARGS} \ + ${NETWORK_ARGS} \ ${TTY_ARGS} \ - --mount type=bind,source="$(shell pwd)"/runtime/tests,target=/tests,readonly \ --pid host \ ${SUBMISSION_IMAGE_ID} \ - python -m pytest -v tests + pixi run -e ${CPU_OR_GPU} python -m pytest tests + ## Open an interactive bash shell within the running container (with network access) interact-container: _check_image _echo_image _submission_write_perms docker run \ ${GPU_ARGS} \ + ${NETWORK_ARGS} \ --mount type=bind,source=${shell pwd}/data,target=/code_execution/data,readonly \ --mount type=bind,source="$(shell pwd)/submission",target=/code_execution/submission \ --shm-size 8g \ diff --git a/runtime/Dockerfile b/runtime/Dockerfile index 9a3285e..39d4548 100644 --- a/runtime/Dockerfile +++ b/runtime/Dockerfile @@ -1,4 +1,4 @@ -FROM --platform=linux/amd64 mambaorg/micromamba:1.5.3-bookworm-slim +FROM ghcr.io/prefix-dev/pixi:0.26.1-jammy-cuda-11.8.0 USER root @@ -10,6 +10,16 @@ ENV DEBIAN_FRONTEND=noninteractive \ PYTHONUNBUFFERED=1 \ SHELL=/bin/bash +# Create user andset permissions +ENV RUNTIME_USER=runtimeuser +ENV RUNTIME_UID=1000 +ENV RUNTIME_GID=1000 +ENV CPU_OR_GPU=$CPU_OR_GPU + +RUN echo "Creating ${RUNTIME_USER} user..." \ + && groupadd --gid ${RUNTIME_GID} ${RUNTIME_USER} \ + && useradd --create-home --gid ${RUNTIME_GID} --no-log-init --uid ${RUNTIME_UID} ${RUNTIME_USER} + COPY apt.txt apt.txt RUN apt-get update --fix-missing \ && apt-get install -y apt-utils 2> /dev/null \ @@ -17,17 +27,22 @@ RUN apt-get update --fix-missing \ && apt-get clean \ && rm -rf /var/lib/apt/lists/* /apt.txt -COPY --chown=$MAMBA_USER:$MAMBA_USER conda-lock-${CPU_OR_GPU}.yml /tmp/conda-lock.yml -RUN micromamba install --name base --yes --file /tmp/conda-lock.yml && \ - micromamba clean --all --force-pkgs-dirs --yes - +# Set up code execution working directory RUN mkdir /code_execution -RUN chown -R ${MAMBA_USER}:${MAMBA_USER} /code_execution +RUN chown -R ${RUNTIME_USER}:${RUNTIME_USER} /code_execution +WORKDIR /code_execution -COPY tests /code_execution/tests -COPY entrypoint.sh /entrypoint.sh +# Switch to runtime user +USER ${RUNTIME_USER} -WORKDIR /code_execution -USER ${MAMBA_USER} +COPY pixi.lock ./pixi.lock +COPY pixi.toml ./pixi.toml + +RUN pixi install -e ${CPU_OR_GPU} --frozen \ + && pixi clean cache --yes \ + && pixi info + +COPY entrypoint.sh /entrypoint.sh +COPY --chown=${RUNTIME_USER}:${RUNTIME_USER} tests ./tests CMD ["bash", "/entrypoint.sh"] diff --git a/runtime/Dockerfile-lock b/runtime/Dockerfile-lock new file mode 100644 index 0000000..7bf622c --- /dev/null +++ b/runtime/Dockerfile-lock @@ -0,0 +1,8 @@ +FROM ghcr.io/prefix-dev/pixi:0.26.1-jammy + +USER root + +RUN mkdir -p /tmp +WORKDIR /tmp + +ENTRYPOINT ["pixi", "tree", "--manifest-path", "pixi.toml", "--platform", "linux-64", "-v"] diff --git a/runtime/conda-lock-cpu.yml b/runtime/conda-lock-cpu.yml deleted file mode 100644 index 4325109..0000000 --- a/runtime/conda-lock-cpu.yml +++ /dev/null @@ -1,4023 +0,0 @@ -# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). 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+[feature.base.dependencies] +accelerate = "0.25.0" +aiofiles = "23.2.1" +aiohttp = "3.8.5" +diskcache = "5.6.3" +einops = "0.7.0" +gensim = "4.3.2" +jsonpickle = "3.0.2" +keras = "*" +lightgbm = "4.1.0" +loguru = "0.7" +numba = "0.58.*" +numpy = "1.25.2" +pandas = "2.1.3" +pip = "23.3" +pytest = "7.4" +python = "3.10.13" +pytorch-lightning = "2.1.1" +ray-default = "2.8.1" +scikit-learn = "1.3.2" +scipy = "1.9.3" +sentencepiece = "0.1.99" +spacy = "3.7.2" +statsmodels = "0.14.0" +tqdm = "4.66" +transformers = "4.35.2" + +# CPU DEPENDENCIES +[feature.cpu] +[feature.cpu.dependencies] +cpuonly = {channel = "pytorch"} # PyTorch metapackage for CPU-only +pytorch = {version = "2.1.1", channel = "pytorch"} +tensorflow = {version = "2.13.1", build="cpu_py310*"} + +# GPU DEPENDENCIES +[feature.gpu] +system-requirements = {cuda = "11.8"} +[feature.gpu.dependencies] +cudatoolkit = {version = "11.8", channel = "conda-forge"} +cuda-cudart = {version = "11.8.*", channel = "nvidia"} +cuda-version = {version = "11.8", channel = "conda-forge"} +cudnn = {version = "*", channel = "conda-forge"} +cupy = {version = "12.*"} +pytorch = {version = "2.1.1", channel = "pytorch"} +pytorch-cuda = {version = "11.8", channel = "pytorch"} # PyTorch metapackage for cuda version +tensorflow = {version = "2.13.1", build="cuda118py310*"} +xformers = {version = "0.0.23", channel = "xformers"} + +[environments] +cpu = { features = ["base", "cpu"]} +gpu = { features = ["base", "gpu"]} diff --git a/runtime/tests/test_lockfile.py b/runtime/tests/test_lockfile.py deleted file mode 100644 index 67bf142..0000000 --- a/runtime/tests/test_lockfile.py +++ /dev/null @@ -1,46 +0,0 @@ -import json -import sys -import warnings -from os import PathLike -from pathlib import Path - -import yaml - - -def main(lockfile_path: PathLike): - with Path(lockfile_path).open("r") as fp: - lockfile = yaml.safe_load(fp) - - conda_deps = { - package["name"]: package["version"] - for package in lockfile["package"] - if package.get("manager") == "conda" - } - pip_deps = { - package["name"]: package["version"] - for package in lockfile["package"] - if package.get("manager") == "pip" - } - - duplicated_deps = conda_deps.keys() & pip_deps.keys() - version_info = { - dep: {"conda": conda_deps[dep], "pip": pip_deps[dep]} for dep in duplicated_deps - } - - if len(duplicated_deps): - version_info = { - dep: {"conda": conda_deps[dep], "pip": pip_deps[dep]} - for dep in duplicated_deps - } - warnings.warn( - f"The lockfile includes conda and pip versions for the following package(s): {', '.join(duplicated_deps)}. " - "This will result in the conda version being uninstalled in favor of the pip version. " - f"This can usually be fixed by updating {lockfile_path} to pin the package in the dependencies section to the version that pip requests.\n\n" - f"""{json.dumps(version_info, indent=2)}""" - ) - else: - print(f"Lockfile {lockfile_path} passed.") - - -if __name__ == "__main__": - main(sys.argv[1])