From 9c0f59f60b9da28c4463c991fc62abbac301569a Mon Sep 17 00:00:00 2001
From: sassy <sassy@hp>
Date: Tue, 5 Nov 2024 16:35:11 +0000
Subject: [PATCH] adding easyconfigs: MAFFT-7.526-GCC-13.2.0-with-extensions.eb

---
 .../MAFFT-7.526-GCC-13.2.0-with-extensions.eb | 51 +++++++++++++++++++
 1 file changed, 51 insertions(+)
 create mode 100644 easybuild/easyconfigs/m/MAFFT/MAFFT-7.526-GCC-13.2.0-with-extensions.eb

diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.526-GCC-13.2.0-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.526-GCC-13.2.0-with-extensions.eb
new file mode 100644
index 000000000000..175e1013f56b
--- /dev/null
+++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.526-GCC-13.2.0-with-extensions.eb
@@ -0,0 +1,51 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# Author: Pablo Escobar Lopez (Swiss Institute of Bioinformatics, Biozentrum - University of Basel)
+# 7.305 modified by:
+# Adam Huffman (The Francis Crick Institute)
+# 7.453 switch to Bundle by:
+# Alex Domingo (Vrije Universiteit Brussel)
+# Thomas Eylenbosch (Gluo NV)
+# J. Sassmannshausen (Imperial College London/UK)
+
+easyblock = 'Bundle'
+
+name = 'MAFFT'
+version = '7.526'
+versionsuffix = '-with-extensions'
+local_commit = 'ee9799916df6a5d5103d46d54933f8eb6d28e244'
+
+homepage = 'https://mafft.cbrc.jp/alignment/software/source.html'
+description = """MAFFT is a multiple sequence alignment program for unix-like operating systems.
+It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment
+of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc."""
+
+toolchain = {'name': 'GCC', 'version': '13.2.0'}
+
+default_easyblock = 'ConfigureMake'
+default_component_specs = {
+    'source_urls': ['https://gitlab.com/sysimm/mafft/-/archive/v%(version)s/'],
+    'sources': ['mafft-%(version)s.tar.gz'],
+    'checksums': ['6f536ec957b76f4e38e869d935d6626d318361ef8ee95e71c795b924f639ee10'],
+    'skipsteps': ['configure'],
+    'installopts': 'PREFIX=%(installdir)s',
+}
+
+components = [
+    (name, version, {
+        'start_dir': 'mafft-v%%(version)s-%s/core' % local_commit,
+    }),
+    ('%s Extensions' % name, version, {
+        'start_dir': 'mafft-v%%(version)s-%s/extensions' % local_commit,
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/mafft', 'libexec/mafft/mxscarnamod'],  # mxscarnamod installed by MAFFT Extensions
+    'dirs': ['libexec/mafft'],
+}
+
+sanity_check_commands = ['mafft --version']
+
+modextrapaths = {'MAFFT_BINARIES': 'libexec/mafft'}
+
+moduleclass = 'bio'