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Familiarization with Julia, Turing, and marginlization. WIP 4ever.

bpa 

├── src 
│     ├── chapter_7_3.jl       <- CJS with constant parameters
│     ├── chapter_7_4_1.jl     <- CJS with time-variation as fixed effect
│     ├── chapter_13_3.jl      <- Single-season occupancy with constant parameters
│     ├── chapter_13_4.jl      <- Single-season occupancy, heterogenous parameters explained by covariates
│     └── chapter_13_5.jl      <- Dynamic multi-season occupancy with constant parameters
└── Rcode
      └── bpa-code.txt          <- for reference. Massive file with all Rcode used in the book

Chapter 5 - State-Space Models for Population Counts

  • 5.2 A Simple Model - chapter_5_2.jl

Chapter 7 - Estimation of Survival from Capture-Recapture Data Using the CJS Model

  • 7.3 Models with constant parameters - chapter_7_3.jl
  • 7.4.1 Models with Time-Variation - fixed - chapter_7_4_1.jl
  • 7.4.2 Models with Time-Variation - ranef - chapter_7_4_2.jl
  • 7.4 Models with Individual-Variation

Chapter 13 - Estimation of Occupancy and Species Distributions from det/non-detect data in metapop designs using site occupancy models

  • 13.3 Single-season Occupancy - chapter_13_3.jl
  • 13.4 Single-season Occupancy with covariates - chapter_13_4.jl
  • 13.5 Dynamic multi-season occupancy - chapter_13_5.jl