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Increase the number of wf_dorado:dorado processes #51

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DustinSokolowski opened this issue Oct 15, 2024 · 0 comments
Open

Increase the number of wf_dorado:dorado processes #51

DustinSokolowski opened this issue Oct 15, 2024 · 0 comments
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@DustinSokolowski
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Ask away!

Hello and thank you for this excellent pipeline.

I've recently obtained some UL data that I am trying to basecall and the runtime for each wf_dorado:dorado processes has increased from <2 hours (when using R10.4 reads) to over 20 hours.

With this in mind, I was hoping to increase parallelization by getting epi2me-labs/wf-basecalling to submit a higher number of wf_dorado:dorado processes. Currently, I am unable to determine if your pipeline has options that will (for example) force epi2me-labs/wf-basecalling to split into 10 processes. Do you know if this is possible?

Thanks,
Dustin

@DustinSokolowski DustinSokolowski added the question Further information is requested label Oct 15, 2024
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