output_definition.json

{
  "files": {
    "workflow-report": {
      "filepath": "./wf-template-report.html",
      "title": "workflow report",
      "description": "Report for all samples",
      "mime-type": "text/html",
      "optional": false,
      "type": "aggregated"
    },
    "read-stats-per-file": {
      "filepath": "./fastq_ingress_results/reads/fastcat_stats/per-file-stats.tsv",
      "title": "Per file read stats",
      "description": "A TSV with per file read stats, including all samples.",
      "mime-type": "text/tsv",
      "optional": false,
      "type": "aggregated"
    },
    "read-stats-per-read": {
      "filepath": "./fastq_ingress_results/reads/fastcat_stats/per-read-stats.tsv",
      "title": "Per read stats",
      "description": "A TSV with per read stats, including all samples.",
      "mime-type": "text/tsv",
      "optional": false,
      "type": "aggregated"
    },
    "run-ids": {
      "filepath": "./fastq_ingress_results/reads/fastcat_stats/run_ids",
      "title": "Run ID's",
      "description": "List of run ID's present in reads.",
      "mime-type": "text/txt",
      "optional": false,
      "type": "aggregated"
    },
    "metamap": {
      "filepath": "./fastq_ingress_results/reads/metamap.json",
      "title": "Meta map json",
      "description": "Meta data used in workflow presented in a JSON.",
      "mime-type": "text/json",
      "optional": false,
      "type": "aggregated"
    },
    "sample-data": {
      "filepath": "./fastq_ingress_results/reads/{{ alias }}.fastq.gz",
      "title": "Concatenated sequence data",
      "description": "Per sample reads concatenated in to one fastq file.",
      "mime-type": "text/json",
      "optional": false,
      "type": "per-sample"
    }
  }
}