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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(SVcalling_wrapperFunc)
export(WCreadCounts)
export(addJumpProbs)
export(allStatus)
export(bam2ranges)
export(changeCellTypesFormat)
export(changeNBparamsFormat)
export(changeRCformat)
export(chrNumber)
export(countAndNBfit_wrapperFunc)
export(decodeStatus)
export(dispersionPar)
export(estimateP)
export(estimateR)
export(filt)
export(genotype_class)
export(getCNprob)
export(getGenotypeProbDataFrame)
export(getGenotypeProbTable)
export(getGenotypeStatus)
export(getNextState)
export(getPossibleCNs)
export(getSegReadCounts)
export(getSegType)
export(get_GT_class_prob_table)
export(getlegend)
export(initialState)
export(jumpProbs)
export(newSVcalling)
export(newgetCellStatProbabilities)
export(newgetGenotypeProbTable)
export(nonzeroCovBins)
export(normalizeProbTable)
export(plotHeatmapSegment)
export(readBams)
export(regularizeProbTable)
export(setPanelHeights)
export(sisterHaplotype)
export(uniqueMappableBins)
importFrom(GenomicAlignments,first)
importFrom(GenomicAlignments,last)
importFrom(GenomicAlignments,readGAlignmentPairs)
importFrom(GenomicAlignments,readGAlignments)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,indexBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(Rsamtools,scanBamHeader)