From 5381a091fea7b2981f862118a82128857d519acd Mon Sep 17 00:00:00 2001 From: Thomas Weber Date: Tue, 9 Jan 2024 22:40:02 +0000 Subject: [PATCH] Watchdog update, workshop progress, blacklisting fix, http remote provider change, more assertions, list_commands coloring fix --- .github/workflows/main.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml index d0f9e34b..57c11414 100644 --- a/.github/workflows/main.yaml +++ b/.github/workflows/main.yaml @@ -48,11 +48,11 @@ jobs: with: directory: . snakefile: ./workflow/Snakefile - stagein: "conda config --set channel_priority flexible && mamba install -c bioconda snakemake-storage-plugin-http" - args: "--cores 1 --latency-wait 60 --configfile .tests/config/simple_config.yaml --software-deployment-method mamba -p --verbose --debug" + # stagein: "conda config --set channel_priority flexible && mamba install -c bioconda snakemake-storage-plugin-http" + args: "--cores 1 --software-deployment-method conda --latency-wait 60 --configfile .tests/config/simple_config.yaml --conda-frontend mamba -p --verbose --debug" - name: Testing report uses: snakemake/snakemake-github-action@v1.24.0 with: directory: . snakefile: ./workflow/Snakefile - args: "--cores 1 --software-deployment-method mamba --latency-wait 60 --configfile .tests/config/simple_config.yaml --report report.zip" + args: "--cores 1 --software-deployment-method conda --latency-wait 60 --configfile .tests/config/simple_config.yaml --report report.zip"