From a68241c7b46df9b52f855fc49ed7a244ee21eee9 Mon Sep 17 00:00:00 2001 From: AtaJadidAhari Date: Tue, 30 Jul 2024 13:53:20 +0200 Subject: [PATCH] roll back to master --- .github/workflows/check-bioc.yml | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 0b3c1f2..01d1215 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -131,7 +131,6 @@ jobs: ## Enable installing XML from source if needed brew install libxml2 echo "XML_CONFIG=/usr/local/opt/libxml2/bin/xml2-config" >> $GITHUB_ENV - pandoc --version ## Required to install magick as noted at ## https://github.com/r-lib/usethis/commit/f1f1e0d10c1ebc75fd4c18fa7e2de4551fd9978f#diff-9bfee71065492f63457918efcd912cf2 brew install imagemagick@6 @@ -158,8 +157,6 @@ jobs: run: | system("tlmgr --version") install.packages("tinytex") - tinytex::install_tinytex(version = "2021.03", force = TRUE) - tinytex::tlmgr("option repository https://ftp.tu-chemnitz.de/pub/tug/historic/systems/texlive/2020/tlnet-final") tinytex::tlmgr_install(pkgs = c("bera", "caption", "changepage", "enumitem", "everysel", "fancyhdr", "footmisc", "grfext", "index", "marginfix", "mathtools", "ms", "nowidow", "parnotes", "parskip", "placeins", "preprint", "ragged2e", "side", "soul", "titlesec", "tocbibind", "xstring")) shell: Rscript {0} @@ -214,9 +211,7 @@ jobs: ## This pass does not use AnVIL and will thus update any packages ## that have seen been updated in Bioconductor message(paste('****', Sys.time(), 'pass number 2 at installing dependencies: any remaining dependencies ****')) - remotes::install_version("knitr", "1.45.0") - remotes::install_cran("magick") - remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = FALSE, force = TRUE) + remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, force = TRUE) shell: Rscript {0} - name: Install BiocGenerics