diff --git a/tools/scater/macros.xml b/tools/scater/macros.xml
index e1f1bbab6d5..663a68121a3 100644
--- a/tools/scater/macros.xml
+++ b/tools/scater/macros.xml
@@ -1,12 +1,12 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.22.0</token>
+    <token name="@TOOL_VERSION@">1.30.1</token>
     <token name="@PROFILE@">20.01</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bioconductor-scater</requirement>
-            <requirement type="package" version="1.7.1">r-optparse</requirement>
-            <requirement type="package" version="0.0.7">r-workflowscriptscommon</requirement>
-            <requirement type="package" version="1.12.0">bioconductor-loomexperiment</requirement>
+            <requirement type="package" version="1.7.5">r-optparse</requirement>
+            <requirement type="package" version="0.0.8">r-workflowscriptscommon</requirement>
+            <requirement type="package" version="1.20.0">bioconductor-loomexperiment</requirement>
             <yield />
         </requirements>
     </xml>
diff --git a/tools/scater/scater-filter.xml b/tools/scater/scater-filter.xml
index a37a1324665..5c5780ab4ee 100644
--- a/tools/scater/scater-filter.xml
+++ b/tools/scater/scater-filter.xml
@@ -5,7 +5,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="0.93_9">r-robustbase</requirement>
+        <requirement type="package" version="0.99_4">r-robustbase</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
 #if $filter_type.filter_type_selector == 'manual':
diff --git a/tools/scater/scater-plot-dist-scatter.xml b/tools/scater/scater-plot-dist-scatter.xml
index 5c81b7e9dc5..2287a6b6c88 100644
--- a/tools/scater/scater-plot-dist-scatter.xml
+++ b/tools/scater/scater-plot-dist-scatter.xml
@@ -5,8 +5,8 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="0.4.0">r-ggpubr</requirement>
-        <requirement type="package" version="1.1.1">r-scales</requirement>
+        <requirement type="package" version="0.6.0">r-ggpubr</requirement>
+        <requirement type="package" version="1.3.0">r-scales</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
 Rscript '$__tool_directory__/scater-plot-dist-scatter.R'
diff --git a/tools/scater/scater-plot-tsne.xml b/tools/scater/scater-plot-tsne.xml
index d06f9b7ad7d..d5b70b61d9a 100644
--- a/tools/scater/scater-plot-tsne.xml
+++ b/tools/scater/scater-plot-tsne.xml
@@ -5,7 +5,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="0.15">r-rtsne</requirement>
+        <requirement type="package" version="0.17">r-rtsne</requirement>
     </expand>
     <command detect_errors="exit_code"><![CDATA[
 Rscript '$__tool_directory__/scater-plot-tsne.R'