diff --git a/tools/rseqc/rseqc_macros.xml b/tools/rseqc/rseqc_macros.xml
index 77c2e857b05..d89cdfc3066 100644
--- a/tools/rseqc/rseqc_macros.xml
+++ b/tools/rseqc/rseqc_macros.xml
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">5.0.3</token>
+    <token name="@TOOL_VERSION@">5.0.4</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <token name="@GALAXY_VERSION@">20.01</token>
     <xml name="requirements">