diff --git a/tools.yml b/tools.yml index 2c726fa..b6cd7e4 100644 --- a/tools.yml +++ b/tools.yml @@ -1,5 +1,8 @@ +global: + default_inherits: default tools: default: + gpus: 0 cores: 1 mem: cores * 3.8 env: {} @@ -2763,3 +2766,19 @@ tools: mem: 32 wig_to_bigWig: mem: 10 +destinations: + default: + params: + tpv_cores: '{cores}' + tpv_gpus: '{gpus}' + tpv_mem: '{mem}' + abstract: true + tpvdb_slurm: + context: + slurm_walltime: '' + slurm_partition: '' + slurm_account: '' + params: + native_specification: | + --nodes=1 --ntasks={cores} --mem={round(mem*1024)} {'--time='+ slurm_walltime if slurm_walltime else ''} {'--gres=gres:gpu:' + str(gpus) if gpus else ''} {'--partition=' + slurm_partition if slurm_partition else ''} {'--account=' + slurm_account if slurm_account else ''} + abstract: true