From 4f40970138fe5aaf5aa12282e992c0edf84ed888 Mon Sep 17 00:00:00 2001 From: cat-bro Date: Mon, 21 Aug 2023 13:32:45 +1000 Subject: [PATCH] Increase allocations for funannotate_annotate and fasttree --- tools.yml | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/tools.yml b/tools.yml index 24c966b..110534d 100644 --- a/tools.yml +++ b/tools.yml @@ -1166,7 +1166,11 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/.*: cores: 4 toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/.*: - mem: 8 + mem: 30 + rules: + - id: fasttree_small_input_rule + if: input_size < 0.005 + mem: 8 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/.*: cores: 2 mem: 8 @@ -1175,8 +1179,8 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/.*: mem: 50 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_annotate/funannotate_annotate/.*: - cores: 4 - mem: 15 + cores: 8 + mem: 40 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/.*: cores: 12 mem: 12