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dbbuilder has unresolvable conda dependencies #739

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cat-bro opened this issue Feb 5, 2024 · 0 comments
Open

dbbuilder has unresolvable conda dependencies #739

cat-bro opened this issue Feb 5, 2024 · 0 comments

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@cat-bro
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cat-bro commented Feb 5, 2024

mamba install -y -n mulled-v1-20ff818e83327f1e474d5c0ed97892f5b23f3b1283b853ee7957449e035b4eed --quiet --override-channels -c conda-forge -c bioconda -c defaults wget=1.20.1 python=3.8 requests=2.20.1
Encountered problems while solving:
  - package requests-2.20.1-py27_1000 requires python >=2.7,<2.8.0a0, but none of the providers can be installed

The combination of conda dependencies could not be resolved and Galaxy was attempting to build the environment at runtime for each job, which led to a lot of overhead for job handlers. I've switched to using requests=2.22 with the env name that galaxy expects and this seems to work OK.

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