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The next release of OpenMS will include the SAGE search engine adapter. The data output of this engine can be processed (re-scoring) by both the percolator tool (already included in galaxyp) and mokapot. The latter re-scoring tool is becoming fashionable in proteomics.
@bernt-matthias has told me that he also thinks it would be interesting to have this tool in galaxy but I leave it to your consideration. Do you think you could include it in the next release, please?.
Thank you very much.
Best regards,
Sergio
The text was updated successfully, but these errors were encountered:
sciordia
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Adding a new re-scoring tool to galaxyp
Adding a new re-scoring tool on usegalaxy.eu
Apr 22, 2024
The next release of OpenMS will include the SAGE search engine adapter. The data output of this engine can be processed (re-scoring) by both the percolator tool (already included in galaxyp) and mokapot. The latter re-scoring tool is becoming fashionable in proteomics.
Here is the link: https://mokapot.readthedocs.io/en/latest/
@bernt-matthias has told me that he also thinks it would be interesting to have this tool in galaxy but I leave it to your consideration. Do you think you could include it in the next release, please?.
Thank you very much.
Best regards,
Sergio
The text was updated successfully, but these errors were encountered: