Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Taxon column (GAF column 13) cardinality should be 1 or greater #464

Open
pgaudet opened this issue Jun 28, 2023 · 2 comments
Open

Taxon column (GAF column 13) cardinality should be 1 or greater #464

pgaudet opened this issue Jun 28, 2023 · 2 comments

Comments

@pgaudet
Copy link
Collaborator

pgaudet commented Jun 28, 2023

Hello,

Currently the cardinality of the Taxon column (GAF column 13) is 1 or 2; however there are terms that describe interactions between 3 species, so the cardinality should be 1 or greater

@balhoff Can we change this in the documentation (http://geneontology.org/docs/go-annotation-file-gaf-format-2.2/) , or is this a change in format?

Thanks, Pascale

@balhoff
Copy link
Member

balhoff commented Jun 28, 2023

Since it already can handle 2 (separated by pipe), it shouldn't require any syntax change to handle greater.

@kltm
Copy link
Member

kltm commented Jun 28, 2023

If the official documentation and spec does not include 3+, it is a format change. We cannot just change the spec without iteration. The new spec should be 2.2.1, considered a non-breaking bug fix change.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants