diff --git a/modules/local/build_vep_cache.nf b/modules/local/build_vep_cache.nf index 0fdacd1..c83c41a 100644 --- a/modules/local/build_vep_cache.nf +++ b/modules/local/build_vep_cache.nf @@ -48,7 +48,7 @@ process BUILD_VEP_CACHE { stub: """ - touch vep_cache + mkdir vep_cache touch vep_plugin_files.csv cat <<-END_VERSIONS > versions.yml diff --git a/modules/local/vep_gnomad_download.nf b/modules/local/vep_gnomad_download.nf index 76ef21d..77b9e42 100644 --- a/modules/local/vep_gnomad_download.nf +++ b/modules/local/vep_gnomad_download.nf @@ -43,6 +43,8 @@ process VEP_GNOMAD_DOWNLOAD { cat <<-END_VERSIONS > versions.yml "${task.process}": wget: \$(echo wget -V 2>&1 | grep "GNU Wget" | cut -d" " -f3 > versions.yml) + bcftools: \$(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*\$//') + tabix: \$(echo \$(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*\$//') END_VERSIONS """