diff --git a/CHANGELOG.md b/CHANGELOG.md index 0021ba7..314bbe9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -36,15 +36,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Updated modules using drop drop_config_runAE, drop_config_runAS, drop_sample_annot, and drop_filter_results [#147](https://github.com/genomic-medicine-sweden/tomte/pull/147) - Updated nf-core/tools template to v3.0.2 [#167](https://github.com/genomic-medicine-sweden/tomte/pull/167) - Updated multiqc version to 1.25.1 [#167](https://github.com/genomic-medicine-sweden/tomte/pull/167) -- Updated modules [#177](https://github.com/genomic-medicine-sweden/tomte/pull/177) +- Updated modules bcftools/annotate, bcftools/merge, bcftools/mpileup, bcftools/norm, bcftools/stats, bcftools/view, cat/fastq, ensemblvep/filtervep, ensemblvep/vep, fastp, gatk4/asereadcounter, gatk4/bedtointervallist, gatk4/createsequencedictionary, gatk4/haplotypecaller, gatk4/splitncigarreads, gatk4/variantfiltration, gawk, gffcompare, gunzip, picard/collectinsertsizemetrics, picard/collectrnaseqmetrics, salmon/index, salmon/quant, samtools/faidx, samtools/index, samtools/view, star/align, star/genomegenerate, stringtie/stringtie, tabix/bgziptabix, tabix/tabix, ucsc/wigtobigwig, untar [#177](https://github.com/genomic-medicine-sweden/tomte/pull/177) | Tool | Old version | New version | | ------------------------------ | ----------- | ----------- | -| ensemblvep/filtervep | 110 | 112 | -| ensemblvep/vep | 110 | 112 | +| ensemblvep/filtervep | 110 | 113 | +| ensemblvep/vep | 110 | 113 | | DROP | 1.3.3 | 1.4.0 | | multiqc | 1.21 | 1.25.1 | -| ensemblvep/filtervep | 112 | 113 | +| cat/fastq | 8.30 | 9.5 | | ensemblvep/vep | 112 | 113 | | picard/collectinsertsizemtrics | 3.2.0 | 3.3.0 | | salmon/index | 1.10.1 | 1.10.3 | @@ -52,6 +52,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 | samtools/faidx | 1.20 | 1.21 | | samtools/index | 1.20 | 1.21 | | samtools/view | 1.20 | 1.21 | +| star/align | 2.7.10a | 2.7.11b | +| star/genomegenerate | 2.7.10a | 2.7.11b | | stringtie/stringtie | 2.2.1 | 2.2.3 | ## 2.2.1 - Scrooge [2024-08-28]