diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index b66e8e95..5851a9f3 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,5 +1,5 @@ report_comment: > - This report has been generated by the genomic-medicine-sweden/tomte + This report has been generated by the genomic-medicine-sweden/tomte analysis pipeline. For information about how to interpret these results, please see the documentation. report_section_order: diff --git a/modules.json b/modules.json index 72ab8a5a..24b93745 100644 --- a/modules.json +++ b/modules.json @@ -33,7 +33,7 @@ }, "custom/dumpsoftwareversions": { "branch": "master", - "git_sha": "8fc1d24c710ebe1d5de0f2447ec9439fd3d9d66a", + "git_sha": "fc6caedab1c71113aa440900e5989dd1c03ec58f", "installed_by": ["modules"] }, "fastp": { diff --git a/modules/nf-core/custom/dumpsoftwareversions/environment.yml b/modules/nf-core/custom/dumpsoftwareversions/environment.yml index 7ca22161..9d0e6b20 100644 --- a/modules/nf-core/custom/dumpsoftwareversions/environment.yml +++ b/modules/nf-core/custom/dumpsoftwareversions/environment.yml @@ -3,4 +3,4 @@ channels: - bioconda - defaults dependencies: - - bioconda::multiqc=1.15 + - bioconda::multiqc=1.17 diff --git a/modules/nf-core/custom/dumpsoftwareversions/main.nf b/modules/nf-core/custom/dumpsoftwareversions/main.nf index e562259e..7685b33c 100644 --- a/modules/nf-core/custom/dumpsoftwareversions/main.nf +++ b/modules/nf-core/custom/dumpsoftwareversions/main.nf @@ -4,8 +4,8 @@ process CUSTOM_DUMPSOFTWAREVERSIONS { // Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/multiqc:1.15--pyhdfd78af_0' : - 'biocontainers/multiqc:1.15--pyhdfd78af_0' }" + 'https://depot.galaxyproject.org/singularity/multiqc:1.17--pyhdfd78af_0' : + 'biocontainers/multiqc:1.17--pyhdfd78af_0' }" input: path versions diff --git a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap index 8713b921..4274ed57 100644 --- a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap +++ b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap @@ -3,25 +3,25 @@ "content": [ { "0": [ - "software_versions.yml:md5,a027f820f30b8191a20ca16465daaf37" + "software_versions.yml:md5,1c851188476409cda5752ce971b20b58" ], "1": [ - "software_versions_mqc.yml:md5,ee4a1d028ad29987f9ac511f4668f17c" + "software_versions_mqc.yml:md5,2570f4ba271ad08357b0d3d32a9cf84d" ], "2": [ - "versions.yml:md5,f47ebd22aba1dd987b7e5d5247b766c3" + "versions.yml:md5,3843ac526e762117eedf8825b40683df" ], "mqc_yml": [ - "software_versions_mqc.yml:md5,ee4a1d028ad29987f9ac511f4668f17c" + "software_versions_mqc.yml:md5,2570f4ba271ad08357b0d3d32a9cf84d" ], "versions": [ - "versions.yml:md5,f47ebd22aba1dd987b7e5d5247b766c3" + "versions.yml:md5,3843ac526e762117eedf8825b40683df" ], "yml": [ - "software_versions.yml:md5,a027f820f30b8191a20ca16465daaf37" + "software_versions.yml:md5,1c851188476409cda5752ce971b20b58" ] } ], - "timestamp": "2023-10-11T17:10:02.930699" + "timestamp": "2023-11-03T14:43:22.157011" } } diff --git a/nextflow.config b/nextflow.config index 578e2b37..37486b4a 100644 --- a/nextflow.config +++ b/nextflow.config @@ -252,7 +252,7 @@ manifest { description = """Pipeline to analyse RNAseq from raredisease patients""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '1.0dev' + version = '0.1.0' doi = '' }