diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index b66e8e95..5851a9f3 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -1,5 +1,5 @@
report_comment: >
- This report has been generated by the genomic-medicine-sweden/tomte
+ This report has been generated by the genomic-medicine-sweden/tomte
analysis pipeline. For information about how to interpret these results, please see the
documentation.
report_section_order:
diff --git a/modules.json b/modules.json
index 72ab8a5a..24b93745 100644
--- a/modules.json
+++ b/modules.json
@@ -33,7 +33,7 @@
},
"custom/dumpsoftwareversions": {
"branch": "master",
- "git_sha": "8fc1d24c710ebe1d5de0f2447ec9439fd3d9d66a",
+ "git_sha": "fc6caedab1c71113aa440900e5989dd1c03ec58f",
"installed_by": ["modules"]
},
"fastp": {
diff --git a/modules/nf-core/custom/dumpsoftwareversions/environment.yml b/modules/nf-core/custom/dumpsoftwareversions/environment.yml
index 7ca22161..9d0e6b20 100644
--- a/modules/nf-core/custom/dumpsoftwareversions/environment.yml
+++ b/modules/nf-core/custom/dumpsoftwareversions/environment.yml
@@ -3,4 +3,4 @@ channels:
- bioconda
- defaults
dependencies:
- - bioconda::multiqc=1.15
+ - bioconda::multiqc=1.17
diff --git a/modules/nf-core/custom/dumpsoftwareversions/main.nf b/modules/nf-core/custom/dumpsoftwareversions/main.nf
index e562259e..7685b33c 100644
--- a/modules/nf-core/custom/dumpsoftwareversions/main.nf
+++ b/modules/nf-core/custom/dumpsoftwareversions/main.nf
@@ -4,8 +4,8 @@ process CUSTOM_DUMPSOFTWAREVERSIONS {
// Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
- 'https://depot.galaxyproject.org/singularity/multiqc:1.15--pyhdfd78af_0' :
- 'biocontainers/multiqc:1.15--pyhdfd78af_0' }"
+ 'https://depot.galaxyproject.org/singularity/multiqc:1.17--pyhdfd78af_0' :
+ 'biocontainers/multiqc:1.17--pyhdfd78af_0' }"
input:
path versions
diff --git a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap
index 8713b921..4274ed57 100644
--- a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap
+++ b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap
@@ -3,25 +3,25 @@
"content": [
{
"0": [
- "software_versions.yml:md5,a027f820f30b8191a20ca16465daaf37"
+ "software_versions.yml:md5,1c851188476409cda5752ce971b20b58"
],
"1": [
- "software_versions_mqc.yml:md5,ee4a1d028ad29987f9ac511f4668f17c"
+ "software_versions_mqc.yml:md5,2570f4ba271ad08357b0d3d32a9cf84d"
],
"2": [
- "versions.yml:md5,f47ebd22aba1dd987b7e5d5247b766c3"
+ "versions.yml:md5,3843ac526e762117eedf8825b40683df"
],
"mqc_yml": [
- "software_versions_mqc.yml:md5,ee4a1d028ad29987f9ac511f4668f17c"
+ "software_versions_mqc.yml:md5,2570f4ba271ad08357b0d3d32a9cf84d"
],
"versions": [
- "versions.yml:md5,f47ebd22aba1dd987b7e5d5247b766c3"
+ "versions.yml:md5,3843ac526e762117eedf8825b40683df"
],
"yml": [
- "software_versions.yml:md5,a027f820f30b8191a20ca16465daaf37"
+ "software_versions.yml:md5,1c851188476409cda5752ce971b20b58"
]
}
],
- "timestamp": "2023-10-11T17:10:02.930699"
+ "timestamp": "2023-11-03T14:43:22.157011"
}
}
diff --git a/nextflow.config b/nextflow.config
index 578e2b37..37486b4a 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -252,7 +252,7 @@ manifest {
description = """Pipeline to analyse RNAseq from raredisease patients"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
- version = '1.0dev'
+ version = '0.1.0'
doi = ''
}