From b48fd64132b86138479f84702868945900afbd77 Mon Sep 17 00:00:00 2001
From: Lucpen <lucia.penaperez@hasta-login.local>
Date: Sun, 13 Oct 2024 21:07:58 +0200
Subject: [PATCH] try to fix ci.yml

---
 .github/workflows/ci.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 5a90cdb..83973be 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -44,8 +44,8 @@ jobs:
           - isMaster: false
             profile: "singularity"
         parameters:
-          - "test,docker"
-          - "test,docker --skip_subsample_region true --skip_downsample true --skip_build_tracks true --skip_stringtie true --skip_vep true --skip_drop_ae true --skip_drop_as true"
+          - "docker"
+          - "docker --skip_subsample_region true --skip_downsample true --skip_build_tracks true --skip_stringtie true --skip_vep true --skip_drop_ae true --skip_drop_as true"
     steps:
       - name: Check out pipeline code
         uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
@@ -85,4 +85,4 @@ jobs:
 
       - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results
+          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.parameters }} --outdir ./results