diff --git a/workflows/tomte.nf b/workflows/tomte.nf index 567294b1..2879182b 100644 --- a/workflows/tomte.nf +++ b/workflows/tomte.nf @@ -69,6 +69,7 @@ workflow TOMTE { : Channel.empty() ch_vep_extra_files_unsplit = params.vep_plugin_files ? Channel.fromPath(params.vep_plugin_files).collect() : Channel.value([]) + ch_platform = params.platform.collect() // Read and store paths in the vep_plugin_files file ch_vep_extra_files_unsplit.splitCsv ( header:true ) @@ -112,7 +113,7 @@ workflow TOMTE { ch_samplesheet, ch_references.star_index, ch_references.gtf, - params.platform, + ch_platform, params.subsample_bed, params.seed_frac, params.num_reads,