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Cache reference genome BED obtained from CellBase #7

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priesgo opened this issue Nov 24, 2016 · 0 comments

Milestone

Gene Panels and G...

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priesgo commented Nov 24, 2016

In order to improve performance and improve robustness towards possible CellBase server failures we want to cache the results obtained for each gene.

Subtasks:

Identify the caching unit (could be organism-assembly-gene)
Implement cache storage
Implement cache reading

Acceptance criteria:

Caching works at gene level. For instance if we cache a panel and then run a whole exome, genes in the panel will be read from the cache, while the rest will be queried into CellBase

priesgo added this to the Gene Panels and Gene List coverage calculation milestone

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