From 49a0533c4907ae02999d2a647f23cbc526165590 Mon Sep 17 00:00:00 2001
From: Scott Chamberlain <sachamber@fredhutch.org>
Date: Tue, 6 Feb 2024 16:27:51 -0800
Subject: [PATCH] use lintr gh action

---
 .github/workflows/lint.yaml | 32 ++++++++++++++++++++++++++++++++
 .lintr                      |  2 ++
 2 files changed, 34 insertions(+)
 create mode 100644 .github/workflows/lint.yaml
 create mode 100644 .lintr

diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml
new file mode 100644
index 0000000..5e2dce3
--- /dev/null
+++ b/.github/workflows/lint.yaml
@@ -0,0 +1,32 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, auth-change]
+  pull_request:
+    branches: [main, auth-change]
+
+name: lint
+
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::lintr, local::.
+          needs: lint
+
+      - name: Lint
+        run: lintr::lint_package()
+        shell: Rscript {0}
+        env:
+          LINTR_ERROR_ON_LINT: true
diff --git a/.lintr b/.lintr
new file mode 100644
index 0000000..3d4eb22
--- /dev/null
+++ b/.lintr
@@ -0,0 +1,2 @@
+linters: linters_with_defaults() # see vignette("lintr")
+encoding: "UTF-8"