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stack_helpers.sh
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stack_helpers.sh
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#!/bin/bash
function update_modules {
local prefix=${PREFIX:-${HPC_OPT:-"/usr/local"}}
local modpath=$1
local name=$2
local version=$3
local py_version=${4:-}
local module_substitutions=${5:-}
case $modpath in
python )
if [[ "${VENVTYPE:-"pyvenv"}" == "pyvenv" ]]; then
local tmpl_file=$HPC_STACK_ROOT/modulefiles/python/pythonName/pythonVersion/pyvenv/pyvenv.lua
elif [[ "${VENVTYPE:-"pyvenv"}" == "condaenv" ]]; then
local tmpl_file=$HPC_STACK_ROOT/modulefiles/python/pythonName/pythonVersion/condaenv/condaenv.lua
fi
local to_dir=$prefix/modulefiles/python/$HPC_PYTHON
;;
core )
local tmpl_file=$HPC_STACK_ROOT/modulefiles/core/$name/$name.lua
local to_dir=$prefix/modulefiles/core
;;
compiler )
local tmpl_file=$HPC_STACK_ROOT/modulefiles/compiler/compilerName/compilerVersion/$name/$name.lua
local to_dir=$prefix/modulefiles/compiler/$HPC_COMPILER
;;
mpi )
local tmpl_file=$HPC_STACK_ROOT/modulefiles/mpi/compilerName/compilerVersion/mpiName/mpiVersion/$name/$name.lua
local to_dir=$prefix/modulefiles/mpi/$HPC_COMPILER/$HPC_MPI
;;
* )
echo "ERROR: INVALID MODULE PATH, ABORT!"
exit 1
;;
esac
[[ -e $tmpl_file ]] || ( echo "ERROR: $tmpl_file NOT FOUND! ABORT!"; exit 1 )
[[ -d $to_dir ]] || ( mkdir -p $to_dir )
cd $to_dir || ( echo "ERROR: $to_dir MODULE DIRECTORY NOT FOUND! ABORT!"; exit 1 )
$SUDO mkdir -p $name; cd $name
# CMAKE_INSTALL_LIBDIR is used by some projects (i.e. lib, lib64)
# Detect this when installing the module so the module variables point to the correct path
local testdir=${HPC_STACK_ROOT}/${PKGDIR:-"pkg"}/libdir_test
if [[ ! -f $testdir/cmake_install_libdir.txt ]]; then
mkdir -p $testdir
cat >> $testdir/CMakeLists.txt << EOF
cmake_minimum_required(VERSION 3.0)
project(test_install_dir LANGUAGES C)
include(GNUInstallDirs)
file(WRITE "cmake_install_libdir.txt" \${CMAKE_INSTALL_LIBDIR})
EOF
cmake -S $testdir -B $testdir
fi
if [[ $name != "cmake" || $name != "mpi" || $name != "gnu" ]]; then
CMAKE_INSTALL_LIBDIR=$(cat $testdir/cmake_install_libdir.txt)
CMAKE_OPTS="-DCMAKE_INSTALL_LIBDIR=${CMAKE_INSTALL_LIBDIR}"
CMAKE_OPTS+=" -DTMPL_FILE=$tmpl_file -DVERSION=$version"
[[ -n "${py_version:-}" ]] && CMAKE_OPTS+=" -DPYTHON_VERSION=$py_version"
CMAKE_OPTS+=" ${module_substitutions}"
# Install the module with configure_file, replacing ${CMAKE_INSTALL_LIBDIR} (and potentially other variables)
# with the actual value for that system
$SUDO cmake $CMAKE_OPTS -P ${HPC_STACK_ROOT}/cmake/configure_module.cmake
else
$SUDO cp $tmpl_file $version.lua
fi
# Make the latest installed version the default
[[ -e default ]] && $SUDO rm -f default
$SUDO ln -s $version.lua default
}
function no_modules {
echo "=========================="
echo "no_modules()"
# this function defines environment variables that are
# normally done by the modules.
# It's mainly intended for use when not using LMod
local compilerName=$(echo $HPC_COMPILER | cut -d/ -f1)
local mpiName=$(echo $HPC_MPI | cut -d/ -f1)
# these can be specified in the config file
# so these should be considered defaults
case $compilerName in
gnu|gcc )
export SERIAL_CC=${SERIAL_CC:-"gcc"}
export SERIAL_CXX=${SERIAL_CXX:-"g++"}
export SERIAL_FC=${SERIAL_FC:-"gfortran"}
;;
intel|ips )
export SERIAL_CC=${SERIAL_CC:-"icc"}
export SERIAL_CXX=${SERIAL_CXX:-"icpc"}
export SERIAL_FC=${SERIAL_FC:-"ifort"}
;;
clang )
export SERIAL_CC=${SERIAL_CC:-"clang"}
export SERIAL_CXX=${SERIAL_CXX:-"clang++"}
export SERIAL_FC=${SERIAL_FC:-"gfortran"}
;;
cray | cray* )
export SERIAL_CC=${SERIAL_CC:-"cc"}
export SERIAL_CXX=${SERIAL_CXX:-"CC"}
export SERIAL_FC=${SERIAL_FC:-"ftn"}
;;
* )
echo "Unknown compiler option = $compilerName, ABORT!"
local abort=Y
;;
esac
case $mpiName in
openmpi | mpich )
export MPI_CC=${MPI_CC:-"mpicc"}
export MPI_CXX=${MPI_CXX:-"mpicxx"}
export MPI_FC=${MPI_FC:-"mpifort"}
;;
impi )
export MPI_CC=${MPI_CC:-"mpiicc"}
export MPI_CXX=${MPI_CXX:-"mpiicpc"}
export MPI_FC=${MPI_FC:-"mpiifort"}
;;
cray | cray* )
export MPI_CC=${MPI_CC:-"cc"}
export MPI_CXX=${MPI_CXX:-"CC"}
export MPI_FC=${MPI_FC:-"ftn"}
;;
mpt )
export MPI_CC=${MPI_CC:-"mpicc"}
export MPI_CXX=${MPI_CXX:-"CC"}
export MPI_FC=${MPI_FC:-"mpif90"}
;;
* )
echo "Unknown MPI option = $mpiName, ABORT!"
local abort=Y
;;
esac
echo "C Compiler: $SERIAL_CC"
echo "C++ Compiler: $SERIAL_CXX"
echo "Fortran Compiler: $SERIAL_FC"
echo
echo "MPI C Compiler: $MPI_CC"
echo "MPI C++ Compiler: $MPI_CXX"
echo "MPI Fortran Compiler: $MPI_FC"
[[ ${abort:-} =~ [yYtT] ]] && exit 1
echo "=========================="
}
function set_pkg_root() {
# export <PKG>_ROOT environment variables
echo "=========================="
echo "set_pkg_root()"
local prefix=${PREFIX:-${HPC_OPT:-"/usr/local"}}
for i in $(printenv | grep "STACK_.*_build="); do
local pkg_name=$(echo $i | cut -d= -f1 | cut -d_ -f2- | rev | cut -d_ -f2- | rev)
local pkg=$(echo $pkg_name | tr 'a-z' 'A-Z')
local build=$(echo $i | cut -d= -f2)
if [[ $build =~ ^(yes|YES|true|TRUE)$ ]]; then
eval export ${pkg}_ROOT=$prefix
local var="${pkg}_ROOT"
echo "${pkg}_ROOT = ${!var}"
fi
done
echo "=========================="
}
function set_no_modules_path() {
# add $PREFIX to PATH, LD_LIBRARY_PATH and CMAKE_PREFIX_PATH
echo "=========================="
echo "set_no_modules_path()"
local prefix=${PREFIX:-${HPC_OPT:-"/usr/local"}}
export PATH=$prefix/bin${PATH:+:$PATH}
export LD_LIBRARY_PATH=$prefix/lib${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}
export LD_LIBRARY_PATH=$prefix/lib64${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}
export CMAKE_PREFIX_PATH=$prefix${CMAKE_PREFIX_PATH:+:$CMAKE_PREFIX_PATH}
echo "PATH = ${PATH}"
echo "LD_LIBRARY_PATH = ${LD_LIBRARY_PATH}"
echo "CMAKE_PREFIX_PATH = ${CMAKE_PREFIX_PATH}"
echo "=========================="
}
function build_lib() {
# Args: build_script_name
set +x
local var="STACK_${1}_build"
set +u
local stack_build=${!var}
set -u
# Determine if $1 is an NCEPlib
echo "library to build is $1, is it an NCEPlib?"
local var="STACK_${1}_is_nceplib"
echo "var = $var"
set +u
local is_nceplib=${!var}
set -u
echo "is_nceplib = ${is_nceplib}"
# Determine if $1 is a python virtual environment
local var="STACK_${1}_is_pyvenv"
set +u
local is_pyvenv=${!var}
set -u
echo "is_pyvenv = ${is_pyvenv} "
if [[ ${stack_build} =~ [yYtT] ]]; then
echo " stack_build = ${stack_build}"
local log="$logdir/$1.log"
[[ -f $log ]] && ( logDate=$(date -r $log +%F_%H%M); mv -f $log $log.$logDate )
if [[ ${is_nceplib:-} =~ [yYtT] ]]; then
echo
echo "call ${HPC_STACK_ROOT}/libs/build_nceplibs.sh for $1 build , log is $log "
${HPC_STACK_ROOT}/libs/build_nceplibs.sh "$1" 2>&1 | tee "$log"
elif [[ ${is_pyvenv:-} =~ [yYtT] ]]; then
echo "is_pyvenv = ${is_pyvenv}"
if [[ "${VENVTYPE:-"pyvenv"}" == "pyvenv" ]]; then
echo "call ${HPC_STACK_ROOT}/libs/build_pyvenv.sh for $1 build "
${HPC_STACK_ROOT}/libs/build_pyvenv.sh "$1" 2>&1 | tee "$log"
elif [[ "${VENVTYPE:-"pyvenv"}" == "condaenv" ]]; then
${HPC_STACK_ROOT}/libs/build_condaenv.sh "$1" 2>&1 | tee "$log"
fi
else
${HPC_STACK_ROOT}/libs/build_$1.sh 2>&1 | tee "$log"
echo "call ${HPC_STACK_ROOT}/libs/build_$1.sh for $1 build , log is $log "
fi
local ret=${PIPESTATUS[0]}
if [[ $ret -gt 0 ]]; then
echo "BUILD FAIL! Lib: $1 Error:$ret"
[[ ${STACK_EXIT_ON_FAIL} =~ [yYtT] ]] && exit $ret
fi
echo "BUILD SUCCESS! Lib: $1"
fi
set -x
}
function parse_yaml {
set +x
local yamlprefix=$2
local s='[[:space:]]*' w='[a-zA-Z0-9_]*' fs=$(echo @|tr @ '\034')
sed -ne "s|^\($s\):|\1|" \
-e "s|^\($s\)\($w\)$s:$s[\"']\(.*\)[\"']$s\$|\1$fs\2$fs\3|p" \
-e "s|^\($s\)\($w\)$s:$s\(.*\)$s\$|\1$fs\2$fs\3|p" $1 |
awk -F$fs '{
indent = length($1)/2;
vname[indent] = $2;
for (i in vname) {if (i > indent) {delete vname[i]}}
if (length($3) > 0) {
vn=""; for (i=0; i<indent; i++) {vn=(vn)(vname[i])("_")}
printf("export %s%s%s=\"%s\"\n", "'$yamlprefix'",vn, $2, $3);
}
}'
set -x
}
function build_info() {
echo "=========================="
echo "build_info()"
for i in $(printenv | grep "STACK_.*_build="); do
local pkg_name=$(echo $i | cut -d= -f1 | cut -d_ -f2- | rev | cut -d_ -f2- | rev)
local pkg=$(echo $pkg_name | tr 'a-z' 'A-Z')
local build=$(echo $i | cut -d= -f2)
if [[ $build =~ ^(yes|YES|true|TRUE)$ ]]; then
local ver="STACK_${pkg_name}_version"
set +u
local stack_ver=${!ver}
set -u
echo "build: $pkg_name | version: $stack_ver"
fi
done
echo "=========================="
}
function compilermpi_info() {
local python=$HPC_PYTHON
local compiler=$HPC_COMPILER
local mpi=$HPC_MPI
local pythonName=$(echo $HPC_PYTHON | cut -d/ -f1)
local pythonVersion=$(echo $HPC_PYTHON | cut -d/ -f2)
local compilerName=$(echo $compiler | cut -d/ -f1)
local compilerVersion=$(echo $compiler | cut -d/ -f2)
local mpiName=$(echo $mpi | cut -d/ -f1)
local mpiVersion=$(echo $mpi | cut -d/ -f2)
echo "Python: $pythonName/$pythonVersion"
echo "Compiler: $compilerName/$compilerVersion"
echo "MPI: $mpiName/$mpiVersion"
}
export -f update_modules
export -f no_modules
export -f set_pkg_root
export -f set_no_modules_path
export -f build_lib
export -f parse_yaml
export -f build_info
export -f compilermpi_info