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Speedseq SV failure: reference not found #133

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Ravillee opened this issue Oct 21, 2018 · 1 comment
Open

Speedseq SV failure: reference not found #133

Ravillee opened this issue Oct 21, 2018 · 1 comment

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@Ravillee
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Hi, I met a problem while running speedseq sv. it shows that: Error: reference fasta file not found, but it did not have any mistakes during speedseq alignment with the same reference fasta file. The reference fasta file is human_g1k_v37.fasta and it has already been indexed by bwa.
@wisekh6
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wisekh6 commented Nov 20, 2019

Hi, I also have a same issue. any suggestion?

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@wisekh6 @Ravillee