From cc10a9fc3802a19ffd80b7286ea02c9839f1627b Mon Sep 17 00:00:00 2001
From: Dave Larson <dlarson@genome.wustl.edu>
Date: Tue, 3 Apr 2018 14:05:07 -0500
Subject: [PATCH] Fix bnd warning conditional

---
 svtyper/classic.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/svtyper/classic.py b/svtyper/classic.py
index 2194da9..8c79da4 100755
--- a/svtyper/classic.py
+++ b/svtyper/classic.py
@@ -518,7 +518,7 @@ def sv_genotype(bam_string,
             vcf_out.write(var2.get_var_string() + '\n')
 
     # throw warning if we've lost unpaired breakends
-    if True:
+    if breakend_dict:
         logging.warning('Unpaired breakends found in file. These will not be present in output.')
 
     # close the files