diff --git a/regression/basic-flatfield-estimation-tool/flatfieldestimationusingbasicalgorithm..cwl b/regression/basic-flatfield-estimation-tool/flatfieldestimationusingbasicalgorithm.cwl similarity index 91% rename from regression/basic-flatfield-estimation-tool/flatfieldestimationusingbasicalgorithm..cwl rename to regression/basic-flatfield-estimation-tool/flatfieldestimationusingbasicalgorithm.cwl index 8b11696a5..9aad914f7 100644 --- a/regression/basic-flatfield-estimation-tool/flatfieldestimationusingbasicalgorithm..cwl +++ b/regression/basic-flatfield-estimation-tool/flatfieldestimationusingbasicalgorithm.cwl @@ -28,7 +28,7 @@ outputs: type: Directory requirements: DockerRequirement: - dockerPull: polusai/basic-flatfield-estimation-tool:2.1.2-dev0 + dockerPull: polusai/basic-flatfield-estimation-tool:2.1.3-dev0 InitialWorkDirRequirement: listing: - entry: $(inputs.outDir) diff --git a/regression/basic-flatfield-estimation-tool/ict.yaml b/regression/basic-flatfield-estimation-tool/ict.yaml index 201cc9f85..144bac961 100644 --- a/regression/basic-flatfield-estimation-tool/ict.yaml +++ b/regression/basic-flatfield-estimation-tool/ict.yaml @@ -1,62 +1,63 @@ author: -- Nick Schaub -- Najib Ishaq + - Nick Schaub + - Najib Ishaq contact: nick.schaub@nih.gov -container: polusai/basic-flatfield-estimation-tool:2.1.3-dev0-dev0 +container: polusai/basic-flatfield-estimation-tool:2.1.3-dev0 description: Generates images used for flatfield correction using the BaSiC algorithm. entrypoint: python3 -m polus.images.regression.basic_flatfield_estimation inputs: -- description: Input image collection. - format: - - collection - name: inpDir - required: true - type: path -- description: Filename pattern used to separate images by channel, timepoint, and - replicate. - format: - - string - name: filePattern - required: true - type: string -- description: Group images together for flatfield by variable. - format: - - string - name: groupBy - required: false - type: string -- description: Calculate darkfield image. - format: - - boolean - name: getDarkfield - required: true - type: boolean + - description: Input image collection. + format: + - collection + name: inpDir + required: true + type: path + - description: + Filename pattern used to separate images by channel, timepoint, and + replicate. + format: + - string + name: filePattern + required: true + type: string + - description: Group images together for flatfield by variable. + format: + - string + name: groupBy + required: false + type: string + - description: Calculate darkfield image. + format: + - boolean + name: getDarkfield + required: true + type: boolean name: polusai/FlatfieldEstimationusingBaSiCalgorithm. outputs: -- description: Output data for the plugin - format: - - collection - name: outDir - required: true - type: path -repository: https://github.com/polusai/polus-plugins + - description: Output data for the plugin + format: + - collection + name: outDir + required: true + type: path +repository: https://github.com/polusai/image-tools specVersion: 1.0.0 title: Flatfield Estimation using BaSiC algorithm. ui: -- description: Image collection... - key: inputs.inpDir - title: 'Input image collection: ' - type: path -- description: Use a filename pattern to calculate flatfield information by subsets - key: inputs.filePattern - title: 'Filename pattern: ' - type: text -- description: Group data together with varying variable values. - key: inputs.groupBy - title: 'Grouping Variables: ' - type: text -- description: If selected, will generate a darkfield image - key: inputs.getDarkfield - title: 'Calculate darkfield: ' - type: checkbox -version: 2.1.3-dev0-dev0 + - description: Image collection... + key: inputs.inpDir + title: "Input image collection: " + type: path + - description: Use a filename pattern to calculate flatfield information by subsets + key: inputs.filePattern + title: "Filename pattern: " + type: text + - description: Group data together with varying variable values. + key: inputs.groupBy + title: "Grouping Variables: " + type: text + - description: If selected, will generate a darkfield image + key: inputs.getDarkfield + title: "Calculate darkfield: " + type: checkbox +version: 2.1.3-dev0