From d13440a448fae534c03b44d06691d8d02a8d8552 Mon Sep 17 00:00:00 2001 From: Hamdah Shafqat Abbasi Date: Tue, 5 Nov 2024 21:06:22 -0500 Subject: [PATCH] =?UTF-8?q?Bump=20version:=202.1.2=20=E2=86=92=202.1.3-dev?= =?UTF-8?q?0?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- regression/basic-flatfield-estimation-tool/.bumpversion.cfg | 6 +++++- regression/basic-flatfield-estimation-tool/README.md | 2 +- regression/basic-flatfield-estimation-tool/VERSION | 2 +- regression/basic-flatfield-estimation-tool/ict.yaml | 4 ++-- regression/basic-flatfield-estimation-tool/plugin.json | 4 ++-- regression/basic-flatfield-estimation-tool/pyproject.toml | 4 ++-- .../regression/basic_flatfield_estimation/__init__.py | 2 +- 7 files changed, 14 insertions(+), 10 deletions(-) diff --git a/regression/basic-flatfield-estimation-tool/.bumpversion.cfg b/regression/basic-flatfield-estimation-tool/.bumpversion.cfg index 20fe6a09a..7fa3dd96b 100644 --- a/regression/basic-flatfield-estimation-tool/.bumpversion.cfg +++ b/regression/basic-flatfield-estimation-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 2.1.2 +current_version = 2.1.3-dev0 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? @@ -26,4 +26,8 @@ replace = version = "{new_version}" [bumpversion:file:README.md] +[bumpversion:file:flatfieldestimationusingbasicalgorithm.cwl] + +[bumpversion:file:ict.yaml] + [bumpversion:file:src/polus/images/regression/basic_flatfield_estimation/__init__.py] diff --git a/regression/basic-flatfield-estimation-tool/README.md b/regression/basic-flatfield-estimation-tool/README.md index 9e18763f3..8c0ca14c3 100644 --- a/regression/basic-flatfield-estimation-tool/README.md +++ b/regression/basic-flatfield-estimation-tool/README.md @@ -1,4 +1,4 @@ -# BaSiC Flatfield Correction (v2.1.2) +# BaSiC Flatfield Correction (v2.1.3-dev0) This WIPP plugin will take a collection of images and use the BaSiC flatfield correction algorithm to generate a flatfield image, a darkfield image, and a diff --git a/regression/basic-flatfield-estimation-tool/VERSION b/regression/basic-flatfield-estimation-tool/VERSION index eca07e4c1..05580bc16 100644 --- a/regression/basic-flatfield-estimation-tool/VERSION +++ b/regression/basic-flatfield-estimation-tool/VERSION @@ -1 +1 @@ -2.1.2 +2.1.3-dev0 diff --git a/regression/basic-flatfield-estimation-tool/ict.yaml b/regression/basic-flatfield-estimation-tool/ict.yaml index 2bfd41bf6..201cc9f85 100644 --- a/regression/basic-flatfield-estimation-tool/ict.yaml +++ b/regression/basic-flatfield-estimation-tool/ict.yaml @@ -2,7 +2,7 @@ author: - Nick Schaub - Najib Ishaq contact: nick.schaub@nih.gov -container: polusai/basic-flatfield-estimation-tool:2.1.2-dev0 +container: polusai/basic-flatfield-estimation-tool:2.1.3-dev0-dev0 description: Generates images used for flatfield correction using the BaSiC algorithm. entrypoint: python3 -m polus.images.regression.basic_flatfield_estimation inputs: @@ -59,4 +59,4 @@ ui: key: inputs.getDarkfield title: 'Calculate darkfield: ' type: checkbox -version: 2.1.2-dev0 +version: 2.1.3-dev0-dev0 diff --git a/regression/basic-flatfield-estimation-tool/plugin.json b/regression/basic-flatfield-estimation-tool/plugin.json index d7d0f4c1f..44efee67e 100644 --- a/regression/basic-flatfield-estimation-tool/plugin.json +++ b/regression/basic-flatfield-estimation-tool/plugin.json @@ -1,6 +1,6 @@ { "name": "BaSiC Flatfield Estimation", - "version": "2.1.2", + "version": "2.1.3-dev0", "title": "Flatfield Estimation using BaSiC algorithm.", "description": "Generates images used for flatfield correction using the BaSiC algorithm.", "author": "Nick Schaub (nick.schaub@nih.gov), Najib Ishaq (najib.ishaq@nih.gov)", @@ -8,7 +8,7 @@ "repository": "https://github.com/polusai/polus-plugins", "website": "https://ncats.nih.gov/preclinical/core/informatics", "citation": "Peng et al. \"A BaSiC tool for background and shading correction of optical microscopy images\" Nature Communications (2017)", - "containerId": "polusai/basic-flatfield-estimation-tool:2.1.2", + "containerId": "polusai/basic-flatfield-estimation-tool:2.1.3-dev0", "baseCommand": [ "python3", "-m", diff --git a/regression/basic-flatfield-estimation-tool/pyproject.toml b/regression/basic-flatfield-estimation-tool/pyproject.toml index 74029b97e..111735d7b 100644 --- a/regression/basic-flatfield-estimation-tool/pyproject.toml +++ b/regression/basic-flatfield-estimation-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-regression-basic-flatfield-estimation" -version = "2.1.2" +version = "2.1.3-dev0" description = "" authors = [ "Nick Schaub ", @@ -16,7 +16,7 @@ filepattern = "^2.0.4" typer = { version = "^0.7.0", extras = ["all"] } numpy = "^1.24.3" tqdm = "^4.65.0" -basicpy = "1.1.0" +basicpy = "1.2.0" [tool.poetry.group.dev.dependencies] bump2version = "^1.0.1" diff --git a/regression/basic-flatfield-estimation-tool/src/polus/images/regression/basic_flatfield_estimation/__init__.py b/regression/basic-flatfield-estimation-tool/src/polus/images/regression/basic_flatfield_estimation/__init__.py index 886a43b11..0d675c385 100644 --- a/regression/basic-flatfield-estimation-tool/src/polus/images/regression/basic_flatfield_estimation/__init__.py +++ b/regression/basic-flatfield-estimation-tool/src/polus/images/regression/basic_flatfield_estimation/__init__.py @@ -10,7 +10,7 @@ __all__ = ["estimate", "__version__"] -__version__ = "2.1.2" +__version__ = "2.1.3-dev0" # Set the basicpy logger to warning logging.getLogger("basicpy.basicpy").setLevel(logging.WARNING)