-
Notifications
You must be signed in to change notification settings - Fork 10
356 lines (303 loc) · 11.5 KB
/
rbc_test.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
name: RBC
on:
# Trigger the workflow on push or pull request,
# but only for the main branch
pull_request:
branches:
- main
# kill any previous running job on a new commit
concurrency:
group: build-and-test-rbc-${{ github.head_ref }}
cancel-in-progress: true
jobs:
lint:
if: ${{ !contains(github.event.pull_request.labels.*.name, 'skip-tests') }}
runs-on: ubuntu-latest
steps:
- name: Checkout code
uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
- name: Install flake8
run: |
pip install flake8
- name: Lint:flake8
run: |
flake8 .
remotejit:
name: ${{ matrix.os }} - Python v${{ matrix.python-version }} - Numba v${{ matrix.numba-version }}
runs-on: ${{ matrix.os }}
strategy:
# setting fail-fast=true seems to cause connection issues in remotejit tests
fail-fast: false
matrix:
include:
- os: ubuntu-latest
python-version: '3.10'
numba-version: '0.55'
needs: [lint, heavydb]
steps:
- name: Checkout code
uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: ${{ matrix.python-version }}
channel-priority: strict
channels: conda-forge
- name: Install mamba
shell: bash -l {0}
run: |
conda install mamba -c conda-forge
- name: Configure miniconda
shell: bash -l {0}
run: |
conda env config vars set MAMBA_NO_BANNER=1
- name: Create rbc test environment v${{ matrix.python-version }}
shell: bash -l {0}
run: |
cat environment.yml > rbc_test.yaml
echo " - numba=${{ matrix.numba-version }}" >> rbc_test.yaml
echo " - python=${{ matrix.python-version }}" >> rbc_test.yaml
mamba env create --file=rbc_test.yaml -n rbc
- name: rbc conda config
shell: bash -l {0}
run: mamba run -n rbc conda config --show
- name: rbc conda list
shell: bash -l {0}
run: |
mamba run -n rbc conda list
- name: Develop rbc
shell: bash -l {0}
run: |
mamba run -n rbc python setup.py develop
- name: Run rbc tests
shell: bash -l {0}
env:
EXPECTED_PYTHON_VERSION: ${{ matrix.python-version }}
EXPECTED_NUMBA_VERSION: ${{ matrix.numba-version }}
run: |
mamba run -n rbc pytest -sv -r A rbc/ -x
heavydb:
name: Heavydb ${{ matrix.heavydb-version }} - ${{ matrix.os }} - Numba v${{matrix.numba-version}} - Python v${{ matrix.python-version }} [${{ matrix.heavydb-from }}]
runs-on: ${{ matrix.os }}
timeout-minutes: 35
strategy:
fail-fast: false
matrix:
# os: [ubuntu-latest]
# python-version: ['3.10', '3.9', '3.8']
# numba-version: ['0.56', '0.55']
# heavydb-version: ['6.2', '6.1', '6.0']
# heavydb-from: [conda]
include:
- os: ubuntu-latest
python-version: '3.10'
numba-version: '0.56'
heavydb-version: 6.1
heavydb-from: conda
# - os: ubuntu-latest
# python-version: '3.10'
# numba-version: '0.56'
# heavydb-version: dev
# docker-image: heavyai/core-os-cpu-dev:latest
# heavydb-from: docker
# - os: ubuntu-latest
# python-version: '3.10'
# numba-version: '0.55'
# heavydb-version: dev
# docker-image: heavyai/core-os-cpu-dev:latest
# heavydb-from: docker
# needs: lint
steps:
- name: Checkout code
uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: ${{ matrix.python-version }}
channel-priority: strict
channels: conda-forge
- name: Install mamba
shell: bash -l {0}
run: |
conda install mamba -c conda-forge
- name: Configure miniconda
shell: bash -l {0}
run: |
conda env config vars set MAMBA_NO_BANNER=1
# heavydb must be run in an environment that is independent of rbc environment
- name: Install heavydb v${{ matrix.heavydb-version }} [conda]
shell: bash -l {0}
if: matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'conda'
run: |
mamba create -n heavydb-env heavydb=${{ matrix.heavydb-version }}*=*_cpu -c conda-forge
- name: Build heavydb docker image and run it [docker]
shell: bash -l {0}
env:
HEAVYDB_DOCKER_IMAGE: ${{ matrix.docker-image }}
if: matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'docker'
run: |
# force docker-compose installation
mamba create -n docker docker-compose -c conda-forge
# run docker services
mamba run -n docker docker-compose build
mamba run -n docker docker-compose up -d
sleep 20
- name: heavydb-env conda list [conda]
shell: bash -l {0}
if: matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'conda'
run: |
mamba run -n heavydb-env conda list
- name: Start heavydb [conda]
shell: bash -l {0}
if: matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'conda'
run: |
mkdir storage
mamba run -n heavydb-env initheavy storage -f
mamba run -n heavydb-env heavydb --version
RUN_FLAGS="--enable-runtime-udfs --enable-table-functions --enable-dev-table-functions --enable-udf-registration-for-all-users"
echo ${RUN_FLAGS}
mamba run -n heavydb-env heavydb $RUN_FLAGS &> heavydb-output.txt &
sleep 10
- name: Create rbc test environment v${{ matrix.python-version }}
shell: bash -l {0}
run: |
cat environment.yml > rbc_test.yaml
echo " - numba=${{ matrix.numba-version }}" >> rbc_test.yaml
echo " - python=${{ matrix.python-version }}" >> rbc_test.yaml
mamba env create --file=rbc_test.yaml -n rbc
- name: rbc conda config
shell: bash -l {0}
run: |
mamba run -n rbc conda config --show
- name: rbc conda list
shell: bash -l {0}
run: |
mamba run -n rbc conda list
- name: Develop rbc
shell: bash -l {0}
run: |
mamba run -n rbc python setup.py develop
- name: Run rbc tests [docker]
shell: bash -l {0}
if: matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'docker'
env:
HEAVYDB_SOURCE: ${{ matrix.heavydb-from }}
HEAVYDB_DEV_LABEL: ${{ 'docker-dev' }}
EXPECTED_PYTHON_VERSION: ${{ matrix.python-version }}
EXPECTED_HEAVYDB_VERSION: ${{ matrix.heavydb-version }}
EXPECTED_NUMBA_VERSION: ${{ matrix.numba-version }}
RBC_TESTS_FULL: TRUE
run: |
mamba run -n rbc pytest -sv -r A rbc/tests/heavydb/ -x
- name: Run rbc tests
shell: bash -l {0}
if: ${{ ! ( matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'docker' ) }}
env:
HEAVYDB_SOURCE: ${{ matrix.heavydb-from }}
EXPECTED_PYTHON_VERSION: ${{ matrix.python-version }}
EXPECTED_HEAVYDB_VERSION: ${{ matrix.heavydb-version }}
EXPECTED_NUMBA_VERSION: ${{ matrix.numba-version }}
RBC_TESTS_FULL: TRUE
run: |
mamba run -n rbc pytest -sv -r A rbc/tests/heavydb/ -x
- name: Run doctests
shell: bash -l {0}
# requires HeavyDB 6.4 or newer
if: ${{ false }}
run: |
mamba run -n rbc pytest -sv -r A rbc/stdlib/ --doctest-modules -x
- name: Show Heavydb conda logs on failure [conda]
shell: bash -l {0}
if: failure() && matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'conda'
run: |
mamba run -n heavydb-env cat storage/mapd_log/heavydb.INFO
mamba run -n heavydb-env cat storage/mapd_log/heavydb.WARNING
mamba run -n heavydb-env cat storage/mapd_log/heavydb.ERROR
- name: Show Heavydb docker logs on failure [docker]
shell: bash -l {0}
if: failure() && matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'docker'
run: |
mamba run -n docker docker-compose top # to check if server is still alive
mamba run -n docker docker-compose exec -T ls
- name: Stop Heavydb server [conda]
shell: bash -l {0}
continue-on-error: true
if: matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'conda'
run: |
mamba run -n heavydb-env killall heavydb
sleep 5
- name: Run Non-HeavyDB tests
shell: bash -l {0}
env:
HEAVYDB_SOURCE: ${{ matrix.heavydb-from }}
EXPECTED_PYTHON_VERSION: ${{ matrix.python-version }}
EXPECTED_HEAVYDB_VERSION: ${{ matrix.heavydb-version }}
EXPECTED_NUMBA_VERSION: ${{ matrix.numba-version }}
RBC_TESTS_FULL: TRUE
run: |
mamba run -n rbc pytest -sv -r A rbc/tests/ -x --ignore rbc/tests/heavydb
- name: Show Heavydb server output [conda]
shell: bash -l {0}
if: matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'conda'
run: |
cat heavydb-output.txt
- name: Show Heavydb docker logs on failure [docker]
shell: bash -l {0}
timeout-minutes: 2
if: ${{ failure() && matrix.os == 'ubuntu-latest' && matrix.heavydb-from == 'docker' }}
run: |
mamba run -n docker docker-compose logs --no-color --tail=10000 -f -t \> heavydb-docker.log
cat heavydb-docker.log
eval-notebooks:
runs-on: ubuntu-latest
needs: lint
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.8
- uses: conda-incubator/setup-miniconda@v2
with:
python-version: 3.8
channel-priority: strict
channels: conda-forge
environment-file: environment.yml
- name: Install additional packages
shell: bash -l {0}
run: |
conda install mamba -c conda-forge -y
mamba install -c conda-forge heavydb=6.2*=*_cpu numba=0.56 nbval ibis-heavyai matplotlib pandas
- name: Start heavydb server
shell: bash -l {0}
run: |
mkdir storage && initheavy storage -f
heavydb --version
heavydb --enable-dev-table-functions --enable-udf-registration-for-all-users --enable-runtime-udfs --enable-table-functions 2>&1 > heavydb-output.txt &
sleep 10
- name: conda config
shell: bash -l {0}
run: conda config --show
- name: conda list
shell: bash -l {0}
run: |
conda list
- name: Install RBC
shell: bash -l {0}
continue-on-error: true
run: |
pip install -e .
- name: Execute pytest
shell: bash -l {0}
run: |
pytest -v -rs --nbval notebooks/ -x --ignore notebooks/geo
pkill -f heavydb
cat heavydb-output.txt