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MANIFEST
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MANIFEST
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install.tcsh
install_linux.sh
install_muscle.tcsh
install_usearch.tcsh
LICENSE
Makefile.PL
MANIFEST
README.md
samples/Caporaso_FASTA/L6S20_19119.fna
samples/Caporaso_FASTA/L6S21_19130.fna
samples/Caporaso_FASTA/L6S22_19141.fna
samples/Caporaso_FASTA/L6S23_19152.fna
samples/Caporaso_FASTA/L6S24_19162.fna
samples/Caporaso_FASTA/L6S25_19173.fna
samples/Caporaso_FASTA/L6S26_19184.fna
samples/Caporaso_FASTA/L6S27_19195.fna
samples/Caporaso_FASTA/L6S28_19206.fna
samples/Caporaso_FASTA/L6S29_19216.fna
samples/Caporaso_FASTQ/L6S20.fastq
samples/Caporaso_FASTQ/L6S21.fastq
samples/Caporaso_FASTQ/L6S22.fastq
samples/Caporaso_FASTQ/L6S23.fastq
samples/Caporaso_FASTQ/L6S24.fastq
samples/Caporaso_FASTQ/L6S25.fastq
samples/Caporaso_FASTQ/L6S26.fastq
samples/Caporaso_FASTQ/L6S27.fastq
samples/Caporaso_FASTQ/L6S28.fastq
samples/Caporaso_FASTQ/L6S29.fastq
samples/Caporaso_GutSamples/1_335.fastq
samples/Caporaso_GutSamples/F4_Apr09.fastq
samples/Caporaso_GutSamples/F4_Jan09.fastq
samples/Caporaso_GutSamples/F4_Oct08.fastq
samples/Caporaso_GutSamples/M3_Apr09.fastq
samples/Caporaso_GutSamples/M3_Jan09.fastq
samples/Caporaso_GutSamples/M3_Oct08.fastq
samples/README.txt
samples/run_example1.tcsh
samples/run_example2.tcsh
samples/run_example3.tcsh
src/cff2qiime.pl
src/errorRates.pl
src/filterIndels.pl
src/getCandidates.pl
src/getReals.pl
src/interestingPairs.pl
src/mergeSeqs.pl
src/neighbors.pl
src/nZeros.pl
src/run_CFF_on_FastA.tcsh
src/run_CFF_on_FastQ.tcsh