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aligner.php
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aligner.php
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<?php if(!isset($_SESSION)){session_start();} ?>
<?php if(!isset($_SESSION["db_ids"])){$_SESSION["db_ids"]=array();} ?>
<?php if(!isset($_SESSION["blast_ids"])){$_SESSION["blast_ids"]=array();} ?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
<title>Breaks alignment</title>
<link rel="icon" type="image/png" href="css/Synteruptor_logo_square.png">
<link rel="stylesheet" type="text/css" href="css/common.css">
<link rel="stylesheet" type="text/css" href="css/aligner.css">
<script type="text/javascript" src="js/jquery/jquery-1.12.min.js"></script>
<script type="text/javascript" src="js/jquery/d3.min.js"></script>
<script type="text/javascript" src="js/common.js"></script>
<script type="text/javascript" src="js/aligner.js"></script>
</head>
<nav>
<?php
require_once("common.php");
print_sidebar();
?>
</nav>
<body>
<?php
$name = "Breaks alignment ";
if (isset($_GET["breakid"])) {
$name .= " #" . $_GET["breakid"];
}
print_header("aligner", $name);
?>
<div id="content">
<h2>Breaks alignment</h2>
<div id="links">
</div>
<div id="loading"></div>
<div id="message"></div>
<div id ="data_content">
<div id="intro" style="display: none;">
</div>
<div id="canvas"></div>
<div class="infobox legend_box">
<h3>Legend</h3>
<ul>
<li><span class="legend_ortho">CDS with orthologs</span></li>
<li><span class="legend_pseudo">Pseudogenes</span></li>
<li><span class="legend_other">Other genes (RNAs)</span></li>
<li>In the break of the reference genome:<ul>
<li><span class="legend_noortho1">CDS without ortholog</span></li>
<li><span class="legend_ortho1">CDS with ortholog found outside of the break</span></li>
</ul></li>
<li>In the break of the compared genomes:<ul>
<li><span class="legend_noortho2">CDS without ortholog</span></li>
<li><span class="legend_ortho2">CDS with ortholog found outside of the break</span></li>
</ul></li>
</ul>
</div>
<div id="footer" style="clear:both; padding: 2em;"></div>
</div>
</body>
</html>